Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2156 123 2e-23 seq614 118 1e-21 >seq2156 Length=2198910 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | ||| | ||| || || | || || || ||||| || ||||| ||| Sbjct 1777316 GCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGA 1777257 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||||||| ||||||||||| | |||||||| ||||| || || || Sbjct 1777256 CAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGG 1777197 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| || ||| || | | ||| | |||||| | ||| || || Sbjct 1777196 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGAC 1777137 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||| || | || || ||||| || ||||| Sbjct 1777136 CTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | ||| | ||| | ||||||||||| || ||||||||||| Sbjct 1778396 TGACCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCC 1778337 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || || | ||||||||||||||| ||||| | || ||||||||||| ||||| Sbjct 1778336 GACAAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGG- 1778278 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| ||||| || | | || | ||||| | || |||| Sbjct 1778277 GGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 1778218 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| | || || || ||||| ||||| ||||| || ||||| Sbjct 1778217 ACTTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || |||||||| ||||| | |||| |||||||||||| || ||| Sbjct 1776045 GTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCGAGTTGCTTTCCA 1775986 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG--TT 137332 || |||||| ||| || || |||||||| ||||| |||||||| | |||| | | Sbjct 1775985 GCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGGAGTTTTGGACCT 1775926 Query 137333 TTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 137392 | | | ||| | |||||| | || || || || | || | || ||||| || | | Sbjct 1775925 TGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGATGGT-TTGCCCGTGAGGG 1775867 Query 137393 TTTTTACGAATATTTGCAT 137411 | || ||||| || ||||| Sbjct 1775866 TCTTGACGAAAATCTGCAT 1775848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||| |||||||| || | || | |||||| || ||||| ||| Sbjct 1775588 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCA 1775529 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||||||||||||||| ||||| || || |||||||| ||||| || Sbjct 1775528 GCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTC 1775469 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | | || || || | || | || |||||||| | ||| Sbjct 1775468 ACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTT 1775409 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 1775408 TTGACGAAGATTTGCAT 1775392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || | ||| | || || || || || || ||||||||||| Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || ||||| || ||||| ||||||| || ||||| ||||| || Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || || || | | ||| | |||||| | | || || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACC 1775667 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||| ||||||| || || ||||| || ||||| Sbjct 1775666 TCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || |||||||| |||||||||||||||| ||||| || ||||| || || ||| Sbjct 1778136 GTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCA 1778077 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || | || ||||| ||||| || || || || || || ||||| || ||| ||| Sbjct 1778076 GCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTT 1778017 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || || ||||| | || | ||||| ||||| | || Sbjct 1778016 ACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTC 1777957 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 1777956 TTCACAAAGATCTGCAT 1777940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 137188 CCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATT 137247 ||||| | ||| | || | ||||| || ||||| || || ||| |||| || | Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 137248 GTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 137307 |||| |||||||| || || || || |||| ||||||||||||||||| || ||| Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 137308 CCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCA 137367 || || ||||| ||| ||| || | | || | ||||| | ||||| || || Sbjct 1777420 CCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCG 1777361 Query 137368 ACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||||| || || | || || ||||| |||||||| Sbjct 1777360 AGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 >seq614 Length=536467 Score = 118 bits (130), Expect = 1e-21 Identities = 371/566 (66%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 151336 |||| ||| | ||| || | || || || || | ||||| |||| | || | || Sbjct 530748 TTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTACTCGACG 530807 Query 151337 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 151396 ||||| | || | ||| ||| || || ||| ||| ||| ||||| |||||| Sbjct 530808 ATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGG 530867 Query 151397 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT- 151455 ||||||||||||||||| | ||||||||| || ||||||||| ||| |||| | || Sbjct 530868 TTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGATC 530927 Query 151456 GTTTCGCATTAATGTAACCGCGGGCAT-TTGCTCGCGAAACTGGCCTTTATCCTCATAAT 151514 || | || | | | ||| || | || | ||| |||||| | |||||| Sbjct 530928 GTATACCA-CAGTTTCTGGGCGTCGATCTGGCGGATGTAAC-GGCCTTCCTTCTCATAGC 530985 Query 151515 GTTTGTACCAGTAT-TCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTA 151573 | ||| ||| | || || || || || |||| || |||| || ||| || Sbjct 530986 CCTCGTA-GAGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTG 531044 Query 151574 GGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACC 151633 |||||||| | ||||| | ||||||| ||||||||||||||| || | ||||||| | Sbjct 531045 GGACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATC 531104 Query 151634 CATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATG 151693 || | |||| | | || || || | |||||| ||||| ||||| ||| | Sbjct 531105 CACAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACGGAGA 531164 Query 151694 TGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTT 151753 | || | || | ||| |||| |||||||| || | || | || ||||| | Sbjct 531165 TCCAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGT 531224 Query 151754 CG---CTTGCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGT 151810 || ||||| || || || |||| || | | || || |||||||||||||| || Sbjct 531225 CGTTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGA 531284 Query 151811 AGCAGTCCGCTGGCGGTGCCGTTCGT 151836 | | ||| | | || |||||||| Sbjct 531285 ACGATACCGTTCGACGTCCCGTTCGT 531310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530497865200