Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2156 161 2e-34 >seq2156 Length=2198910 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||||| || ||||| ||||| || || || || || Sbjct 1777087 CCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1777028 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||| || || ||||| ||||| ||||| |||| |||||||| ||||| Sbjct 1777027 AACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGA 1776968 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||| ||||| ||||| || ||||| ||||| || |||||| || Sbjct 1776967 ATTCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACC 1776908 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| || | ||||| || || |||||||| Sbjct 1776907 TCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| ||||| ||||||| || || || || || ||||| || || || Sbjct 1777315 CCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGAC 1777256 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||| || ||||| ||||| || || || | || || || || || Sbjct 1777255 AGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGG 1777196 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| |||||||| || |||||||| ||||| ||| || || || Sbjct 1777195 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACC 1777136 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| ||||||||||| || | ||||| || || |||||||| Sbjct 1777135 TCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 138 bits (152), Expect = 2e-27 Identities = 161/216 (75%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || || |||||||||||||| || || ||||| || | | | || Sbjct 1778382 ACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCC 1778323 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| ||||| || || || | ||| || || || || ||||||||||| Sbjct 1778322 GTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGG-ATTCCTTCCTT 1778264 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || || || ||||| || || || ||| | ||||||||| | ||| || Sbjct 1778263 GTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGAT 1778204 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || || || |||||||| Sbjct 1778203 GGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||| ||||| || || ||||| || || ||| || Sbjct 1776619 CGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCT 1776560 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||| || || ||||| |||| |||||||| || || ||||||||||| Sbjct 1776559 TCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTG 1776500 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || || ||||| || || || || || || || | || || Sbjct 1776499 TCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATT 1776440 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | ||| || ||||| ||||||||| Sbjct 1776439 GTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 |||| || ||| || || | || ||||| ||||| ||||| || | || || || || Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 | | || ||||| || || || || || ||||| || | ||| ||||| || || || Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| |||||||||||||| || || || || || || || ||||| || || Sbjct 1777420 CCCTCCTTGTCTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCG 1777361 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || | ||||| || || || ||||| Sbjct 1777360 AGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || || || | ||| || || || || || || || || || || || Sbjct 1775618 CCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1775559 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| |||||||| || ||||||||||| ||||| || | ||| ||||| ||||| Sbjct 1775558 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGG 1775499 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || || || || || || ||||| ||||| || || | || || Sbjct 1775498 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACA 1775439 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || ||||| || | || || || || || |||||| Sbjct 1775438 TCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATT 1775391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981799386369529