Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq614 109 1e-18 >seq614 Length=536467 Score = 109 bits (120), Expect = 1e-18 Identities = 301/461 (65%), Gaps = 3/461 (1%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 || || | ||| || || || ||||| || ||| | ||| ||| || || || Sbjct 531505 CACGCCAGTCCGACGCTGTTCAACGCGGGTACTTGCCGCCCACAGTTGAGCTCCTGTTTC 531446 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 || || ||| || ||||||||||| ||||| || || || | || | || ||| Sbjct 531445 CTGCTGACAATGAAGGATGATTCTATCGAAGGGATCTACGAAACGCTGAGCCAATGCGCT 531386 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA 110648 || || || ||| | | || || |||||| | || | ||| ||||| | | || Sbjct 531385 CTGATCTCGAAATCCGCCGGTGGTATTGGTGTAAACATCCATTGCATTCGACCTACGGGC 531326 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 | | ||||| |||| || | || | || | ||||| ||| | |||| ||| Sbjct 531325 TCTTACATCGCCGGGACGAACGGGACGTCGAACGGTATCGTTCCCATGCTGCGAGTTTTC 531266 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATC 110765 ||| |||| || || || | || || || || | || ||| | || || ||| Sbjct 531265 AACAACACCGCTCGCTACGTCGACCAGGGCGGCAACAAACGACCCGGCGCTTTCGCCATC 531206 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGA 110825 |||||||| || ||||| ||||| || || ||||| || || |||||||| || Sbjct 531205 TATCTCGAGCCGTGGCACGGCGATATTTTCGAGTTCTTGGATCTCCGTAAAAACACTGGC 531146 Query 110826 TTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATG 110885 | ||||| | || || || | || || || |||||||| | || | |||||| Sbjct 531145 ATCGAAGAGATGCGTGCCCGCGACCTCTTCTACGCCCTGTGGATTCCGGACCTGTTCATG 531086 Query 110886 AAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 ||||| ||| || |||| |||| |||||| || |||||||| Sbjct 531085 AAACGCGTTGAACAAAACGGCAAGTGGTCGCTCATGTGTCC 531045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186779179447771