Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2156 96.9 2e-15 >seq2156 Length=2198910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||||||| || ||| | || || | |||||| ||||| || Sbjct 1776595 TCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAG 1776536 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||||| ||||| |||| | ||||| ||||| ||| || | | || | Sbjct 1776535 ATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTT-GGCCTTGACGTT 1776477 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||||| | || || || | ||||| ||||| || || | |||||| || Sbjct 1776476 TTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCAC 1776417 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 1776416 AAAAATCTGCAT 1776405 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||| || || ||| ||||| |||||||| ||| || ||||| |||| || Sbjct 1777921 CACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTC 1777862 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || |||||||| || ||||| | ||||| || || |||| | ||| || ||||| Sbjct 1777861 CAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTG 1777802 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| ||||| | | || | ||||||| | ||| || || | ||||||||||| Sbjct 1777801 GATTTTGGCTTTCA-CGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTT 1777743 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||| ||||| Sbjct 1777742 TTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 33525 ACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAG 33584 |||||| | ||| | ||||| ||| || || |||||| || |||||||| ||| ||| Sbjct 1776073 ACCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAG 1776014 Query 33585 TGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCAC 33644 ||||| |||| || | ||| ||||| || || ||||||||||| || || | || | Sbjct 1776013 CGTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAAT 1775954 Query 33645 ACCTTCTTTGTC 33656 || |||||||| Sbjct 1775953 GCCCTCTTTGTC 1775942 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| | || | ||||| ||| || ||| || || || |||||||| || Sbjct 1776860 ACCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAG 1776801 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | ||||| || || || || | ||||| || || |||| Sbjct 1776800 GAGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGG 1776741 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||||||| |||| | | || | |||||| | ||| | Sbjct 1776740 GATGCCCTCCTTATCCTGAATTTTCGCCTTCA-CGTTCTCGATCGTGTCGGACGGTTCGA 1776682 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||||||| ||||| || | ||||| || ||||||||||| Sbjct 1776681 CTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| |||||| || |||||||| ||| ||| ||||| |||| || | ||| Sbjct 1776380 ATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTG 1776321 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || ||||| || ||||| | |||||| || | || | || || ||||| ||||| Sbjct 1776320 CTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTT 1776261 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || | | | || | ||||| | ||||| || | |||||| ||||| || | Sbjct 1776260 CGCCTTGA-CGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAG 1776202 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || || ||||||||||| Sbjct 1776201 TCAGTGTCTTCACGAAGATCTGCAT 1776177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695142557120