Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2156 120 7e-22 >seq2156 Length=2198910 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||||||||| |||||||| ||||| | || || || || ||| Sbjct 1776408 CAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTCCGAC 1776467 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||||| || || ||||||||| ||| || || Sbjct 1776468 ACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCAACAG 1776527 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||||||||| || || | ||||| ||| | || | ||||||||||| || Sbjct 1776528 CGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAACATC 1776587 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || |||||||| || Sbjct 1776588 CAGAAGGAATCGACGCTTCACCTGGT 1776613 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || || ||| || |||||| |||| Sbjct 1777331 CAAGACCCTCACGGGTAAGACCATCACGCTCGAGGTTGAACCGTCGGACACAATCGAGAA 1777390 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||||||| || || || ||| ||| || ||| | || ||||| Sbjct 1777391 CGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCGCCCGATCAGCAACGTCTCATCTT 1777450 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | |||||||| | || | | || |||| | | ||||| || || Sbjct 1777451 CGCCGGGAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAGCATTCAGAAGGAATC 1777510 Query 206364 TACTCTTCACCTTGT 206378 |||||||| || || Sbjct 1777511 GACTCTTCATCTCGT 1777525 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || ||||| |||||||||||||| | || || ||| || ||||| |||| | | Sbjct 1777727 AAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCCGACACCATCGAGAAC 1777786 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||| || || || || || || || ||| ||| || |||| || || Sbjct 1777787 GTGAAAGCCAAA-ATCCAGGACAAGGAGGGTATCCCGCCCGACCAACAGCGACTCATTTT 1777845 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| ||| |||| || || | ||| || ||| |||||| |||| || ||||| Sbjct 1777846 CGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAACATCCAAAAGGAGTC 1777905 Query 206364 TACTCTTCACCTTGT 206378 || || || || || Sbjct 1777906 GACACTCCATCTCGT 1777920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181787320863331