Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq674 206 7e-49 >seq674 Length=2717 Score = 206 bits (228), Expect = 7e-49 Identities = 461/679 (68%), Gaps = 31/679 (5%) Strand=Plus/Plus Query 16302 CCGCCGCCAGACATGAAGCCGTCAGAGTGGGCGCAGGCTAATATCCGCATTCCGTCTGGC 16361 |||||| |||| | ||||| |||||||| || | || |||||||| ||| Sbjct 302 CCGCCGACAGATTTAGCACCGTCCGAGTGGGCAGAGCGGCACATACGCATTCCCGAAGGC 361 Query 16362 AACGCCGTGCCAGGACCGCTGCGCCTGGATAACGCGCCATACCAGCGCGAACCAATGGAC 16421 ||||| ||||| ||| ||| | | || || ||| ||| || || ||||||||| Sbjct 362 AACGCAGTGCCGGGATTATATCGCGTTGCAAATGCTCCAATCCAACGTGAGCCAATGGAC 421 Query 16422 ATGCTGGTTGACCCTGATTGCTACCGTGTAACGCTGATGTGGGGCGCGCAGGTGGGCAAA 16481 | | | | ||||| ||| | |||||| |||||||||||||||| ||| | || ||| Sbjct 422 CAGTTTATAAATCCTGAATGCCATCGTGTATCGCTGATGTGGGGCGCCCAGATCGGTAAA 481 Query 16482 ACCATGCTGGCACTGT-GCG-TGCAGGCGTAC---AGCGTAGCCGCTGAACCGCGCAGCC 16536 || | | || || | ||| | |||| ||| | || ||| || | || ||| | Sbjct 482 ACGA--CATGCGCTTTAGCGGTACAGGGTTACGCAATCG-AGCAGCGG--CCACGCTCGC 536 Query 16537 AGATGATGATGCAGCCAAGCCAGGATGACTTGCGCACCTGGCTGGAAACGAAATTCAACC 16596 | |||||| | || || || | ||| | |||||||| ||||| |||||||||| Sbjct 537 AAATGATGTTACAACCTTCGCAAGGCGACCTTAAGACCTGGCTTGAAACCAAATTCAACC 596 Query 16597 CTCTGGCGGAAGAATGCGCGCCGGTAAACAA----CGC---CATTGCCAAACCGCGTGGC 16649 || ||| || | | || |||||| ||| | |||| |||||||| || Sbjct 597 CTTTGGTTGACGCCTCCG-------AAACAATCCGCGCACTCGTTGCGAAACCGCGCGGT 649 Query 16650 CGCGACGGGGTGAACAACCAGAAAATGAAATCATACCCTGGCGGGTTCTTGATGTTCGCC 16709 || || || |||||||| || | ||||| || |||||||| || || ||||||| || Sbjct 650 CGTGAAGGCGTGAACAATCAAAGCATGAAGTCCTACCCTGGTGGATTTCTGATGTTTGCT 709 Query 16710 TGGTCCGGTTCGCCAAAGACCATGCGCGGGCGTTCAGCGCCGCTGATTGTATGTGACGAG 16769 ||| | ||||| | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 710 TGGGCGGGTTCCACTCGAACAATGCGCGGGCGATCCGCTCCGCTCATTGTCTGCGACGAA 769 Query 16770 GTAGACGGATATGAACGAACCAG-CGAAGGGCACCCGGTTGGCCTGCTGTGGCAGCGTTC 16828 | ||||| || | || ||| |||||||||||| ||| || | |||||||| | Sbjct 770 ATCGACGGTTA-CAGCGCGACAGACGAAGGGCACCCAGTTTCTCTCATCTGGCAGCGGGC 828 Query 16829 TGCCACCTTCGGTGACCAGCGGTTTTTGCTGGAAA--TCAGCACCCCTACCCTTAAAGGT 16886 || ||||| || || | || |||||| | |||| ||| ||||| || || |||| Sbjct 829 AGCAACCTTTGGCGATGAACGCTTTTTGATCGAAATTTCAACACCC--ACACTGAAAGAC 886 Query 16887 GAATCGTACATCGAAAAAGCGTATGAAATGGGCGACCAGCGGCACTTCTTTGTTTGCTGC 16946 || ||||| |||| ||| | ||| || ||||| ||| || | || | ||| Sbjct 887 TTCTCTTACATAGAAACAGCTTTTGAGGCAGGGGACCAACGGTTTTTTTACGTCCGATGC 946 Query 16947 CCGCACTGTGACGA-TCAC 16964 || |||||| |||| |||| Sbjct 947 CCACACTGTCACGAGTCAC 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135398044946366