Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq614 376 2e-99 seq2156 104 2e-17 >seq614 Length=536467 Score = 376 bits (416), Expect = 2e-99 Identities = 1006/1511 (67%), Gaps = 45/1511 (3%) Strand=Plus/Plus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 |||||||| | ||| || || || | || || |||||| |||||| ||||| ||| | Sbjct 530190 TGATTGACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTAC 530249 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 ||||||| ||||| || ||||| | || || ||||| | ||| || |||||| |||| Sbjct 530250 GGCTCAATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCC 530309 Query 147010 ACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG--CCAGT 147067 | || || ||| || | |||| || || || | || | ||| | ||||| Sbjct 530310 AGCAGCAGACTATTCCGGATTCCGT--GCTGGGCGATTTTTCTCCGAAGACCGTCCCAGT 530367 Query 147068 CCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA--CTCCTCGACTG 147123 |||| | ||| || ||| | || ||||||||||| | ||| || | | | | || | Sbjct 530368 CCCAGAGGTCG--GATGGCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGA--G 530423 Query 147124 GCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCC 147183 |||| | ||| ||| | || |||| |||||| | | ||| | || |||||||| Sbjct 530424 ACGGGGCAGCCGGCGTATGTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCT 530483 Query 147184 TCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCG 147243 || | ||| | | || ||||||||| ||||| |||| || | ||||||| | Sbjct 530484 TCCAACGCAGCGAAATAGATGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGG 530543 Query 147244 CTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCC 147302 || ||| |||| ||| |||| || | || |||||||||| |||||||| ||||| || Sbjct 530544 CTGTCGAAAGG-ATACCGCATCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCC 530602 Query 147303 GATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGTTGCGA 147360 ||| |||||||| | | |||||| || |||| ||| || | |||||||| |||| Sbjct 530603 GATCGGTCGATGTCTCTTGTTGCTTCG-TTCG-GCTTCCGGCACGGGATAGTAGTTGATG 530660 Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 || || || ||||||||||| ||| | |||| || | | | | | | ||||||| Sbjct 530661 TCGATGATTTTGTTGAGGTTTCGCGTGATGGCTTTGGTCACTTCTCTCAATCTCTCGAAG 530720 Query 147421 TCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 || ||| ||||| | | ||| | |||| | ||| | || |||| |||||| Sbjct 530721 TCGAAAGCGCCGTCGT------GCACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCAG 530774 Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 || || |||| || |||| || ||||| |||||||| | ||| || || ||| || Sbjct 530775 ACCGCGATCTCGTCTGGCGACG-AGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTT 530833 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| || | ||| || || ||||| || || ||||| ||||| ||| | |||||||| Sbjct 530834 GATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTA 530893 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGA---TAAACCTATGCAGGTCCTGCGC-TC 147655 ||| ||||| |||| || |||| | || || ||| ||| | ||| || || Sbjct 530894 CGGGGTCCCGGTTTCGATCTGACTTTCCAGGATCGTATACC---ACAGTTTCTGGGCGTC 530950 Query 147656 GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 | | || | | || ||||| || || || || | |||||| | ||| ||||||| Sbjct 530951 GATCTGGCGGATG-TAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGT 531009 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGT 147775 |||| | || ||||| || ||| || |||||||| ||||||||| || ||| Sbjct 531010 CGCCCCACGTGTCACTGAGGCCCGGGCACGTATTGGGACACATGAGCGACCACTTGCCGT 531069 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCG 147835 | ||||||| ||| ||||| ||||| | |||||| ||||| | || ||||| | Sbjct 531070 TTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGGG 531129 Query 147836 CTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTC--AAAT-TAAGCACGCTATAGATGTCG 147891 | ||| || ||| ||| |||| || | | || ||| || | | | || ||| Sbjct 531130 C-ACGCATCTCTTCGATGCCAGTGTT--TTTACGGAGATCCAAGAACTCGA-AAATATCG 531185 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG---CTTTCCGCCCTGGTCG 147948 ||||||| || || | |||| ||| | || || || || |||||||||||| Sbjct 531186 CCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTTGCCGCCCTGGTCG 531245 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 || | ||| | ||||||| || || |||| |||||| | | ||| ||| || ||| Sbjct 531246 ACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCG 531305 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 || || ||| | ||| | ||| | || | ||| || ||||| || Sbjct 531306 TTCGTCCCGGCGATGTAAGAGCCCGTAGGTCGAATGCAATGGATGTTTACACCAATACCA 531365 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| || | || || || |||||| | || || || |||||| || ||||| Sbjct 531366 CCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGTAGATCCCTTCGATAGAA 531425 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | |||| ||||| || | || || || | || ||||| | Sbjct 531426 TCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAACTGTGGGCGGCAAGTACCCGCGTTG 531485 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || || || ||||| ||||| || ||| |||| | ||||| | | || ||||| || Sbjct 531486 AACAGCGTCGGACTGGCGTGGGTGAACCATTTCTCGCTCATGAAGTTGTAGGTCTCGATG 531545 Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 ||| | || | |||||| |||||||| || | || |||||||| ||||||||||| ||| Sbjct 531546 GCGGCCTCCACGTCGTCACCGTGAATTCCGACCGAAACGCGCATCAGCATGTGCTGAGGT 531605 Query 148309 CGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 | ||| | | || | || ||| || || || || ||||||||| | | || Sbjct 531606 CTCTCGACGATTTTACCGTCGATTTTTAGGAGGTAGGATCGCTCGAGGGTTCGGAATCCG 531665 Query 148369 AAGTACTTGTA 148379 ||||| ||||| Sbjct 531666 AAGTAGTTGTA 531676 >seq2156 Length=2198910 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||| ||| | | | || || || || ||||||||||| | ||| || Sbjct 1776848 GCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACC 1776789 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 || ||||||||||| || | |||| || |||||||| || || || ||||| || || Sbjct 1776788 GTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTT 1776729 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| |||||| |||| | || | || |||| ||| || ||||| | ||| | Sbjct 1776728 ATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGAT 1776669 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| ||||| || || ||||| | ||| ||||||||| || Sbjct 1776668 CGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGCCT 1776629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||||||| || || || || |||||||| || | Sbjct 1777905 GACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCG 1777846 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || |||||||| || || || || || || || || ||||| ||||| Sbjct 1777845 AAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACG 1777786 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || || || |||| ||| | |||||| ||||| ||||| || Sbjct 1777785 TTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTC 1777726 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 1777725 ACGAAGATTTGCATG 1777711 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||||| | || || || ||||| || || |||| Sbjct 1776370 GACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCG 1776311 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| ||||| || || || ||||| || | Sbjct 1776310 AAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACG 1776251 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||||| ||| | ||||| |||||||| || || Sbjct 1776250 TTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTC 1776191 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1776190 ACGAAGATCTGCAT 1776177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| ||||| || ||||||||| || || || ||||| Sbjct 1777298 AACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTC 1777239 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||||||| | | || |||||||| || || || || |||||||| || || Sbjct 1777238 GAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTG 1777179 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | ||| | || || | ||||| || || | || | ||| || Sbjct 1777178 GATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTT 1777119 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || || || | ||||||||||||| || Sbjct 1777118 GCCCGTTAGGGTCTTGACGAAAATCTGCATGCCT 1777085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | |||||||| || |||||||||||||| | || || |||||| Sbjct 1776057 ACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCTTCG 1775998 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| | ||||||||| || ||||| ||||| ||||| || Sbjct 1775997 AGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCCTGG 1775938 Query 132035 ATTTTTTG--TTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 | |||| | || | | ||| | || |||| | |||||| |||| || | | || Sbjct 1775937 AGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGGTGA-TGGTT 1775879 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || || | |||||||||||| Sbjct 1775878 TGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| | ||| || ||||| |||||||| || | Sbjct 1775585 GACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCG 1775526 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || ||||| ||||| || || ||||| || ||||| |||| Sbjct 1775525 AAGATCAGACGTTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACA 1775466 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| |||| || |||| ||| | ||||| || || |||||||| Sbjct 1775465 TTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTG 1775406 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1775405 ACGAAGATTTGCAT 1775392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| | ||| || |||||||| ||||| |||| Sbjct 1776598 GATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCG 1776539 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||||||||| || || || ||||| || || ||| || || | Sbjct 1776538 AAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACG 1776479 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || |||| ||||| || |||| || | ||||| || || || ||||| Sbjct 1776478 TTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTC 1776419 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 1776418 ACAAAAATCTGCAT 1776405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||||||||| |||||||| ||||||| || Sbjct 1778161 ACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGT 1778102 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || || | | || |||||||| || ||||| || || || Sbjct 1778101 GCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCC 1778042 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||| || | | || | || || | |||||| ||||| | Sbjct 1778041 CTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAG 1777982 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || || || || || | || ||||||||| || Sbjct 1777981 GGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATGCCT 1777936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||| ||||||| | ||| || |||||||||||| || |||| Sbjct 1777510 GATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTCCCGGCG 1777451 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || ||||| || || ||||| || || || ||| ||| || | Sbjct 1777450 AAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTGACG 1777391 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| || || |||| ||| | || ||||| || || || || Sbjct 1777390 TTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTTACCCGTGAGGGTCTTG 1777331 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||| |||||| || Sbjct 1777330 ACGAAAATTTGCATGCCT 1777313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598027657960