Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq1959 104 2e-17 >seq1959 Length=56421 Score = 104 bits (114), Expect = 2e-17 Identities = 177/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 ||||||||| | ||||| | || || ||| | || |||| || | |||||| Sbjct 45006 CTCGCAGATCAATTGCGCGATTCGATCCCCTTCCGAAACTTTGAAGTCTTCATCGCCGAA 44947 Query 5400 GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCCAC 5459 |||||| || || ||||| | ||||||||| | || ||| | ||||| ||||| || Sbjct 44946 GTTGAAAAGAACGACTCCGACATTCCCTCGGTAATCGAAGTCGATCACGCCAGCTCCGAC 44887 Query 5460 ATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCGTA 5519 ||| | ||| || || | || ||||| ||||| || || || ||||||||||| || | Sbjct 44886 ATCGATGAATTTTTTCGCGGCAAGACCCGACCTGGGAGCGACCCGACCGTAGCATCCCTC 44827 Query 5520 TGGCGGGTGGATCTGCAGATCGGTCAGCACTACCGCGCGCCCCATCGGC-GGCAAGGTGT 5578 ||| ||||| |||||||||||| | ||| | | ||| | || |||| | || Sbjct 44826 TGGTACAGCAATCTGGAGATCGGTCAGCGCCACCAC-CTTCCCGTGAGCTGGCACGACGT 44768 Query 5579 AGTCGTAAGCGCTG 5592 | ||||| || ||| Sbjct 44767 ATTCGTACGCACTG 44754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447798823617960