Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2140 100 9e-18 seq1712 100 9e-18 >seq2140 Length=761746 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 367530 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 367589 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 367590 CCCGGGTTTCGGC 367602 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 381100 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 381159 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 381160 CCGGGTTTCGGC 381171 >seq1712 Length=2183804 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1401184 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1401243 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1401244 CCCGGGTTTCGGC 1401256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849216712095