Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2156 100 3e-16 >seq2156 Length=2198910 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||||||| | ||||| |||| ||||| || | Sbjct 1776405 ATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTCC 1776464 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || || || || || ||||| ||||| Sbjct 1776465 GACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCAA 1776524 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||| || | || |||||||||||||||||| | ||| || ||||||||| Sbjct 1776525 CAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAAC 1776584 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 1776585 ATCCAGAAGGAATCGACGCTTCA 1776607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || | ||||| || | ||||| | |||||||| ||| Sbjct 1777939 CATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGA-GCCGT 1777997 Query 25234 CG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || | || |||||| | ||||| ||| || || || ||||| || || || || | Sbjct 1777998 CGGACACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACC 1778057 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| | || |||| || ||||| || ||||| |||| | | | | |||||||||| Sbjct 1778058 AGCAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACA 1778117 Query 25353 ATATTCAAAAAGAATCCACC 25372 | || |||||||| |||||| Sbjct 1778118 ACATCCAAAAAGAGTCCACC 1778137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || |||||| | ||||| ||||||| |||||| Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || ||||| || || || || || || ||||| ||| Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCC-CCCGACCAG 1778286 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| | || |||| || ||||||||||||||||| | | | |||| ||||||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTC--GGATTACA 1778344 Query 25353 ATATTCAAAAAGAATCCAC 25371 | || || |||||||| || Sbjct 1778345 ACATCCAGAAAGAATCTAC 1778363 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || || || | |||||| |||| || ||| | Sbjct 1777316 CATGCAAATTTTCGTCAAGACCCTCACGGGTAAGACCATCACGCTCGAGGTTGAACCGTC 1777375 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | || || ||| ||| || || ||||| || ||||||||||| Sbjct 1777376 GGACACAATCGAGAACGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCGCCCGATCA 1777435 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | ||||| | || ||| || || |||||||||| | | || || |||| Sbjct 1777436 GCAACGTCTCATCTTCGCCGGGAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAG 1777495 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 ||||| || ||||| || ||||| Sbjct 1777496 CATTCAGAAGGAATCGACTCTTCAT 1777520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | |||||||| |||||||| | || ||||| | | Sbjct 1775620 ATGCAGATCTTCGTGAAGACGCTGACCGGAAAGACGATCACGTTGGAGGTCGAGTCGTCC 1775679 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || || ||||| || || ||||| ||| Sbjct 1775680 GACACGATCGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAG 1775739 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||| || | || ||||| ||||| || || | ||| |||||||||||||| Sbjct 1775740 CAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGACGGACGAACCCTCAGCGATTACAAT 1775799 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || ||||| | ||| | ||| | | || | ||||||| Sbjct 1775800 ATCCAGAAGGAGTCCACGCTCCATCTCGTGCTTCGTCTGCGCGGAGGAA 1775848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082098703520