Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2156 134 1e-26 >seq2156 Length=2198910 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||| | ||| |||||| || || ||||||||| | |||||| |||| || Sbjct 1775829 CACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTC 1775770 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||| || || || |||| ||||||||||| | |||| || ||||||||| Sbjct 1775769 AAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTG 1775710 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| || | | ||||||| ||| || ||||||| ||||||||| || Sbjct 1775709 GATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTT 1775650 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| || ||||| || |||||||||| Sbjct 1775649 TCCGGTCAGCGTCTTCACGAAGATCTGCATTC 1775618 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || ||||||||| || ||||| |||| || || || |||| || Sbjct 1777297 ACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCG 1777238 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| ||||| || || |||| ||||||||||||| || | || |||||||| | Sbjct 1777237 AGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGG 1777178 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | || | | |||||| | || ||||||| |||||||| || Sbjct 1777177 ATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTG 1777118 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || |||||||| Sbjct 1777117 CCCGTTAGGGTCTTGACGAAAATCTGCAT 1777089 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| ||| | || || |||| || || ||||| || || || Sbjct 1776368 CTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAA 1776309 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||||||||| ||| || ||| | | Sbjct 1776308 GATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTT 1776249 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | ||||| || | |||||| ||||| || |||| || ||||| Sbjct 1776248 CTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCAC 1776189 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 1776188 GAAGATCTGCATTC 1776175 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||| || || || |||| |||||||| || || || || Sbjct 1777903 CTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAA 1777844 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | || | | |||||||||| ||| ||| |||| || Sbjct 1777843 AATGAGTCGCTGTTGGTCGGGCGGGATACCCTCCTTGTCCTGGAT-TTTGGCTTTCACGT 1777785 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||| || ||| ||||| | |||||||||||| || || | ||| |||| Sbjct 1777784 TCTCGATGGTGTCGGACGCTTCGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCA 1777725 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 1777724 CGAAGATTTGCAT 1777712 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| |||||||||||| ||| || || | || || |||||||| || || || Sbjct 1778131 CTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 1778072 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||||| ||||||| ||| | | Sbjct 1778071 AATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTT 1778012 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || || |||| ||||| || || || || | || ||||| Sbjct 1778011 CTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCAC 1777952 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1777951 AAAGATCTGCAT 1777940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| | |||||| | || || || || || || || || Sbjct 1776595 TCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAG 1776536 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||| || || | |||| | ||||||||| ||||| ||| | || Sbjct 1776535 ATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTT 1776476 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||| ||||| || || | ||||||||| Sbjct 1776475 TCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACA 1776416 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 1776415 AAAATCTGCATTC 1776403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781141191880