Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq614 280 2e-70 seq946 187 3e-42 >seq614 Length=536467 Score = 280 bits (310), Expect = 2e-70 Identities = 1180/1849 (64%), Gaps = 22/1849 (1%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| | || ||||| || || | | |||||||| |||||||||| | Sbjct 529857 GTGAACTGAATCGCCTGGGCGGCGGGCTTCGTTCTCAAGTAGTACATCCCGGTTTTCAAA 529916 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA-TCGGCTAT 68492 || || |||| |||||||||||||| || || || || |||| ||||| | Sbjct 529917 CCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTTCCCG-AAGTTGGTCTCGGCGAA 529975 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 || || |||| ||||| || ||||||||||| || || | || ||||||||||| || Sbjct 529976 GTGGATGTTCAGAGATTGGCTCTGATCGATGAACGCCCCACGGTCAGCCGCCATTTTGAT 530035 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG 68612 || |||| ||||| | |||||||| ||| | | ||||| | | ||| || | Sbjct 530036 GATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAGAGTTGTTTCAATTTATCAGGGAT 530095 Query 68613 GCTCGTATTTTGAATGGATCCA---CCATCGGATATAATTATATTCTTGATCTCATCATT 68669 ||| || | ||| || | | || | || ||||| ||| || || Sbjct 530096 ATCAAGATTCTGCACGGAACCGTTGCTAGCG---ACAAGCTCGTTCTTCATCGTTTCGTT 530152 Query 68670 CCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCC 68729 ||| | || || | | | | ||||| || |||| || ||||| ||||| || Sbjct 530153 CCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGGTGGTGATTGACGATTTGGAATTCACC 530212 Query 68730 AGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCC 68789 || | |||| | | || | || || || || || || | || || || || || Sbjct 530213 GGAGAGAACTCGTCTGGCATACACGTTGCTCGTGTACGGCTCAATGGACTCGTTGTTGCC 530272 Query 68790 CAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 || || ||||| |||||||| || ||||| || |||| || | |||||| | | || Sbjct 530273 GAGGATCTGAGCCGTTGATGCTGTGGGCATGGGCGCCAGCAGCAGACTATTCCGGATTCC 530332 Query 68850 ATGTGTTATGATTTTATCTTTTA-GATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 || |||||| ||| | || | ||| ||||| || || ||||| |||| Sbjct 530333 GTGCTGGGCGATTTT-TCTCCGAAGACCGTCCCAGTCCCAGAGGTCGGATGGCTTGACAT 530391 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATG----ATCCATTATATGTTTCA 68964 |||| | || | || ||||| || || || | | | | || ||||| || Sbjct 530392 TCCACATGTCATGCTGCAGAATCCCCTT---TG-AGACGGGGCAGCCGGCGTATGTCTCG 530447 Query 68965 TAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTT 69024 || | ||| | ||| || || || || ||||| || || ||| || |||| || ||| Sbjct 530448 TAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTTCCAACGCAGCGAAATAGATGGTT 530507 Query 69025 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084 ||||| || || | || ||||| ||||| | || ||||| ||||| | | || Sbjct 530508 TCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGCTGTCGAAAGGATACCGCATCAGG 530567 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 || || ||||| |||| ||||| || || || ||||| |||| ||||||||| || Sbjct 530568 ATGAACGCATCGGCCAGACCCTGGACACCGATTCCGATCGGTCGATGTCTCTTGTTGCTT 530627 Query 69145 CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACT 69204 | ||| ||||| || | ||||| || || || || || ||||| || || ||||| Sbjct 530628 CGTTCGGCTTCCGGCACGGGATAGTAGTTGATGTCGATGATTTTGTTGAGGTTTCGCGTG 530687 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC-AAATCGTCCATCTATAACAAACAT 69263 | |||| ||| || | | | | || || ||| || || || || || Sbjct 530688 ATGGCTTTGGTCACTTCTCTCAATCTCTCGAAGTCGAAAGCG-CCGTCGTGCACGAAGCG 530746 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 || || || || || || | || || || || | ||| | | | || | | Sbjct 530747 GTTGAGGGCCACCGAAGCCAAGTTGCAGACCGCGATCTCGTCTGGCGACGAGTACTCGAC 530806 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 || ||||| || ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 530807 GATTTCTGTGCAAAGATTCGAGCACTTGATGGTCCCGAGATTCTGTTGGTTGCTCTTGCG 530866 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| || ||||||||||| || || |||| || || ||||| |||||| ||| | || Sbjct 530867 GTTGCAAGCGTCCTTGTACAGCATGTACGGGGTCCCGGTTTCGATCTGACTTTCCAGGAT 530926 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTG 69503 | | ||| | | || | || | ||||||| || || ||||| Sbjct 530927 CGTATACCACAGTTTCTGGGCGTCGATCTGGCGGATGTAACGGCCTTCCTTCTCATAGCC 530986 Query 69504 TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGG 69563 || || ||||| || || ||||| ||| | || || || ||| || Sbjct 530987 CTCGTAGAGTTTCTCGAACTCGTCGCCCCACGTGTCACTGAGGCCCGGGCACGTATTGGG 531046 Query 69564 ACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 |||||| | |||||| | | | | ||| |||||||| || || || |||||||| Sbjct 531047 ACACATGAGCGACCACTTGCCGTTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCA 531106 Query 69624 AAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATC 69683 || || ||||| || | || | | ||||| | || || ||||| ||||| Sbjct 531107 CAGGGCGTAGAAGAGGTCGCGGGCACGCATCTCTTCGATGCCAGTGTTTTTACGGAGATC 531166 Query 69684 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743 | ||||| | |||||| ||||| || || ||||| || || | | || ||||| Sbjct 531167 CAAGAACTCGAAAATATCGCCGTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCG 531226 Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||| || || ||||| || | ||| | || ||||| || | |||| |||||| |||| Sbjct 531227 TTTGTTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAAC 531286 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||||| || || | || || || || | || ||| || | | ||||| | Sbjct 531287 GATACCGTTCGACGTCCCGTTCGTCCCGGCGATGTAAGAGCCCGTAGGTCGAATGCAATG 531346 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || || ||| || || || || ||| ||||| ||||| || | ||| || || Sbjct 531347 GATGTTTACACCAATACCACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTC 531406 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || || || |||||| |||| | || || |||||| || || | Sbjct 531407 GTAGATCCCTTCGATAGAATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAACTGTGG 531466 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043 | ||| ||||| || || | || ||| ||||| ||||||||||| || | Sbjct 531467 GCGGCAAGTACCCGCGTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTCTCGCTCAT 531526 Query 70044 CAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACAC 70102 | ||||| || || || || | || | || ||| | |||||||| | || || | Sbjct 531527 GAAGTTGTAGGTCTCGATGGCGGCCTCCACGTCGTCACCG-TGAATTCCGACCGAAACGC 531585 Query 70103 GCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATT 70162 |||||| ||| |||||||||| || || ||||| | ||||| | ||||| ||| Sbjct 531586 GCATCAGCATGTGCTGAGGTCTCTCGACGATTTTACCGTCGATTTTTAGGAGGTAGGATC 531645 Query 70163 TTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || ||| || || || |||||||| ||||| || ||||| Sbjct 531646 GCTCGAGGGTTCGGAATCCGAAGTAGTTGTAGTTGAAGTCCCTATCGTA 531694 >seq946 Length=1044653 Score = 187 bits (206), Expect = 3e-42 Identities = 468/698 (67%), Gaps = 26/698 (4%) Strand=Plus/Minus Query 39301 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAA 39357 |||||||| || | ||| ||||| ||| ||||| || || |||||||||||||| || Sbjct 24389 ATCTTCTTTGTTGGCCATTACTCCGGCTTTCTGGTACTCGCCGACGCGTTTCTCGAAGAA 24330 Query 39358 ATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATA 39417 || || || || ||||| || || | |||||||||||||| ||||| || | Sbjct 24329 GTTCGTCTTCCCCTCCAACGAGATTTGCTCCATGAAATCAAATGGATTCTGACTGTTCCA 24270 Query 39418 tttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 || | | | | || | || || ||| || ||||||||||||||| ||| Sbjct 24269 CAACTTGTCGCACTCGAGCTCAACCAACAGTCGATCGGCGACAAATTCTATGTATTGTTT 24210 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACT---GGTAGAGCCTCCGTTAGAAACTC 39534 ||| | ||||||||||| || ||| | | |||| ||| || || || ||||| Sbjct 24209 CATGAGATCACAATTCATACC---GAGCATCGCGCACGGTAAAGCTTCGGTGAGGAACTC 24153 Query 39535 TTTTTCGATGTCTACGGCCTCTGTTATTATCG-AT-GTTACTACCTCATCACTCGGTGGA 39592 | ||||| | ||||| | || ||| || | | | ||| | |||| Sbjct 24152 CTGCTCGATCGCAACGGCGTTGCGGATGATCTCATAGATCCG--CTCTACGGACGGTTTC 24095 Query 39593 TGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTA 39652 || | ||| ||| | ||||| | ||| ||||| || ||| |||||||| ||||| | Sbjct 24094 TGGACTAAGTGTCTGAACATAAGGCAAGCGAAATCGGTATGGAGGCCCTCGTCTCTCGAA 24035 Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 |||| |||||| || || | ||| ||||| ||||| || || |||||||| ||||| Sbjct 24034 ATTAGCTCGTTACTGAAAGTCAATCCGGGCATCAGACCGCGTTTCTTGAGCCAGAATATC 23975 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 | ||| || | |||| ||||| || ||||| || || || || || || | | ||| Sbjct 23974 GAAGCGAACGCTCCACTGAAGAAAATCCCTTCGACCGCCGCGAACGCCACGACACGTTCT 23915 Query 39773 CCGTAACTTGTATCATTATGT------ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTT 39826 ||||| ||| |||| || ||||| ||| | |||||||||||||||||||| Sbjct 23914 CCGTAG---GTAGCATTCTGATTCCCGATCCAATTCAGGGCCCAATCAGCTTTCTTCTTG 23858 Query 39827 ACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAAC 39885 | || ||||| || || || || | || |||| || || |||| ||| | | Sbjct 23857 ATGCATGGCATGGTCTCGATGGCCCTGAATAGATGATCACGTTCCATC-GGATCCGTGAT 23799 Query 39886 ATATGTATCTATTAACAGACTA-TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAA 39944 || |||| | | || || | |||||||| ||||| ||||| || ||| | || | Sbjct 23798 GTAGGTATTGAGCAGCA-ACGAGTACATTTCCGAATGAATGTTCTCCATCATGACTTGGA 23740 Query 39945 ATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 | ||||| || || | ||||| || | || |||||| Sbjct 23739 AGCCGTAGAAGCAGCGAGCTTCCGTGACCTGAACCTCT 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889815558040