Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq614 147 3e-30 seq50 84.2 3e-11 >seq614 Length=536467 Score = 147 bits (162), Expect = 3e-30 Identities = 1106/1745 (63%), Gaps = 62/1745 (4%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 |||||||||||| || || | || | |||||| | || | |||||| || | | ||| Sbjct 529895 GTAGTACATCCCGGTTTTCAAACCGAGTTTCCAGCCGTAGAAATGCATCGACGTGAGCTT 529954 Query 117902 GGAGAGGGTTGGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 117960 || | |||| || | | | || ||||| | |||| ||||||||||| || | Sbjct 529955 CCCGAAG-TTGGTCTCGGCGAAGTGGATGTTCAGAGATTGGCTCTGATCGATGAA-CGCC 530012 Query 117961 CC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAG 118019 || || || |||||||| | || | | |||| | |||||| || |||| |||| Sbjct 530013 CCACGGTCAGCCGCCATTTTGATGATGTTCTTCTGAGGCAGTTCCCAAACGGTCCGGTAG 530072 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACC 118079 || | || | | ||| |||||||| | ||| || | ||| || || | | Sbjct 530073 AGTTGTTTCAATTTATCAGGGATATCAAG---ATTCTGCACGGAACCGTTG--CTAG-CG 530126 Query 118080 ATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 | || || ||| | ||| ||| |||||| || | | ||||||||| || ||| Sbjct 530127 ACAAGCTCGTTCTTCATCGTTTCGTTCCAGAGGCCCAAGTCGGTGAGATCCTTCAGGAGG 530186 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 || | |||||| | || ||||| | ||| ||||| ||| | ||| ||||| Sbjct 530187 TGGTGATTGACGATTTGGAATTCACCGGAGAGAACTCGTCTGGCATACACGTTGCTCGTG 530246 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || ||||||| | |||| ||||| || | ||| || || || || |||||||||||||| Sbjct 530247 TACGGCTCAATGGACTCGTTGTTGCCGAGGATCTGAGCCGTTGATGCTGTGGGCATGGGC 530306 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 |||| || || || || |||| || | | || | | ||| |||||||| Sbjct 530307 GCCAGCAGCAGACTATTCCGGATTCCGTGCTGGGCGATTTTTCTCCGAAGACCGTCCCAG 530366 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC--TTGGGACG 118374 || || | || || | | |||||| ||| ||| || || || ||| |||| Sbjct 530367 TCCCAGAGGTCGGATGGCTTGACATTCCACATGTCATGCTGCAGAATCCCCTTTGAGACG 530426 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 || | || | ||||||| || | || | | ||||| | ||| |||| || | Sbjct 530427 --GGGCAGCCGGCGTATGTCTCGTAGGTTCCGTGGATTTCCGCGAGCTCGCAGCTTGCTT 530484 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | || ||| ||| || ||||| || || |||| || | || || | Sbjct 530485 CCAACGCAGCGAAATAGATGGTTTCGAAGATTTTGCTGTTCAGATCCATCGCTTCCGGGC 530544 Query 118495 AATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || || | || | ||| || || || |||| || ||||| |||||||||| || Sbjct 530545 TGTCGAAAG-GATACCGCATCAGGATGAACGCATCGGCCAGACCCTGGACACCGATTCCG 530603 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTA 118610 || || ||||||||| | || ||| || ||| || ||||||||| | || | Sbjct 530604 ATCGGTCGATGTCTCTTGTT--GCTT-CGTTCGGCTTCCGGCACGGGATAGTAGTTGATG 530660 Query 118611 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC-ATGAAGCTTTTCGTA 118669 ||||| | | || || ||| |||| | || || | ||| | || | | ||| | Sbjct 530661 TCGATGATTTTGTTGAGGTTTCGCGTGATGGCTTTGGTCACTTCTCTCAATC-TCTCGAA 530719 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 || ||| ||| | || | || | ||||| | || |||| || || Sbjct 530720 GTCGAAA--GCG----CCGTCGTGCACGAAGCGGTTGAGGGCCACCGAAGCCAAGTTGCA 530773 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 || | | |||| || | |||||| | ||||| ||||| | || || | ||| Sbjct 530774 GACCGCGATCTCGTCTGGCGACGAGTACTCGACGATTTCTGTGCAAAGATTCGAGCACTT 530833 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 ||||| || | |||| ||| || ||| ||| || || |||||||| |||||||| Sbjct 530834 GATGGTCCCGAGATTCTGTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTACAGCATGTA 530893 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCAGACATCGGCAGCTGGC 118907 || ||||| || || | | ||||| || || | | ||| | | || | | Sbjct 530894 CGGGGTCCCGGTTTCGATCT--GACTTTCCAGGATCGTATACCACAGTTTCTGGGC-GTC 530950 Query 118908 ACAGTGGC-GTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTC 118966 |||| | || || || || | ||| || |||||| || ||||| || Sbjct 530951 GATCTGGCGGATGTAACGGCCTTCCTTCTCATAGCCCTCGTAGAGTTTCTCGAACTCGTC 531010 Query 118967 -ACCCACG-GCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 |||||| | | ||||| |||| || | ||| || || | ||| ||||| | || Sbjct 531011 GCCCCACGTGTCACTGAG-GCCC-GGGCACGTATTGGGACACATGAGCGACCACTTGCCG 531068 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 119084 | ||||| || |||||||| ||||| || ||||| || || ||||||| || || Sbjct 531069 TTTTGTTCAACGCGTTTCATGAACAGGTCCGGAATCCACAGGGCGTAGAAGAGGTCGCGG 531128 Query 119085 CAGCGAGCTTCTTC-ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 119143 || ||||| || || || || ||| | ||||| || || | ||||| | Sbjct 531129 GCACGCATCTCTTCGATGCCAGTG-TTTTTACGGAGATCCAAGAACTCGAAAATATCGCC 531187 Query 119144 GTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGCCTGGTTTA 119199 ||||||||| || || || | |||| | || | | | | || |||||| | Sbjct 531188 GTGCCACGGCTCGAGATAGATGGCGAAAGCGCCGGGTCGTTTGTTG-CCGCCCTGGTCGA 531246 Query 119200 CATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCAT 119259 | || | || ||| ||| || || || ||||| |||| |||||| | || || | Sbjct 531247 CGTAGCGAGCGGTGTTGTTGAAAACTCGCAGCATGGGAACGATACCGTTCGACGTCCCGT 531306 Query 119260 TTGTCCC-CCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACC 119317 | ||||| ||| || ||| | | | || | ||||||| | ||||||||| Sbjct 531307 TCGTCCCGGCGATGTAAGAGCC--CGTAGGTCGAATGCAATGGATGTTTACACCAATACC 531364 Query 119318 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 119377 || || | || ||||| | ||||| | | || | |||||||||| ||||| || Sbjct 531365 ACCGGCGGATTTCGAGATCAGAGCGCATTGGCTCAGCGTTTCGTAGATCCCTTCGATAGA 531424 Query 119378 GTCACCCTTATTTGCGATGAGGA---AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGC 119434 ||| |||| ||| | |||| || ||||| || || || | | ||||| || Sbjct 531425 ATCATCCTTCATTGTCAGCAGGAAACAGGAGCTCAAC---TGTGGGCGGCAAGTACCCGC 531481 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTGTCGTAGGTCT 119493 |||||| || || || | |||||| |||| ||| | | | ||| || |||||||| Sbjct 531482 GTTGAACAGCGTCGGACTGGCGTGGGTGAACCATTTC-TCGCTCATGAAGTTGTAGGTCT 531540 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 119553 | | | |||| | ||| || |||||||| |||| ||| || ||||| | ||||| | Sbjct 531541 CGATGGCGGCCTCCACGTCGTCACCGTGAATTCCGACCGAAACGCGCATCAGCATGTGCT 531600 Query 119554 GGGGT 119558 | ||| Sbjct 531601 GAGGT 531605 >seq50 Length=185576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 267/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 || ||||||||||| || | ||| || | ||| ||||| || || || || ||||| ||| Sbjct 171419 TCGAAGCGACCTGGACGCAAGAGCGCTTTGTCGAGGATGTCGATCCGATTGGTCGCTGCG 171360 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | || || | | ||| ||| || |||||||||||| | |||||||| | Sbjct 171359 AGAACTACCACGTTCGTGGTAGTATTGAAACCATCCATCTCAACGAGTAGTTGATTCAAT 171300 Query 14186 GTTTGTTCGCGTTC--ATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || | ||| |||| | | ||| | | | ||||| || |||| | | || |||| Sbjct 171299 GTGTTTTCCTGTTCTGAGTGTCCGCTGAAGTTCTTCCCGC-CT-CGTTTCCTCCCTACGG 171242 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGAT 14301 |||| ||||| |||||||| | ||||| ||| | || | || ||| || || Sbjct 171241 CGTCGATTTCGTCGATGAATAAAATACACGGTGCGTGTTTCCTCGC--TTTCGTGAACAT 171184 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG-CGGCGGAAC 14360 ||||| || ||| | || || ||||| ||||| || | || | || || ||| Sbjct 171183 ATCTCTGACCCTCGATGGGCCCACGCCCACGAACATTTCGAGGAATTCGGATCCCGAAAC 171124 Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 | | | ||| || || || | ||| |||||| | ||| || ||||| ||||| || | Sbjct 171123 ACT-CAGGAACGGTACATTGGCTTCCCCCGCGGTCGCTTTTGCTAGGAGCGTCTTTCCAG 171065 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | || || || | ||| | || || |||||| ||||||| Sbjct 171064 TGCCAGGGGGGCCGGTGAGCATCGCGCCCTTCGGGATCTTGGCACC 171019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418107997160