Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq614 230 3e-55 seq2113 100 3e-16 >seq614 Length=536467 Score = 230 bits (254), Expect = 3e-55 Identities = 414/596 (69%), Gaps = 22/596 (4%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| |||||| | | | |||||||| | | || || |||||||||||| | | Sbjct 531610 GAGAGACCTCAGCACATGCTGATGCGCGTTTCGGTCGGAATTCACGGTGACGACGTGGAG 531551 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || | | ||||| ||| |||| |||||| | || | || || ||||||| || || Sbjct 531550 GCC-GCCATCGAGACCTACAACTTCATGAGCGAGAAATGGTTCACCCACGCCAGTCCGAC 531492 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||||||||||| ||||| | ||| ||| || ||| |||||| || | ||||| Sbjct 531491 GCTGTTCAACGCGGGTACTTGCCGCCCACAGTTGAGCTCCTGTTTCCTGCTGACAATGAA 531432 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 |||||| || ||||| || |||||||| ||||| | | || || | ||||| || | Sbjct 531431 GGATGATTCTATCGAAGGGATCTACGAAACGCTGAGCCAATGCGCTCTGATCTCGAAATC 531372 Query 53413 GTCGGGTGGTATCGGT------ATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCA 53464 | |||||||| ||| ||||| ||| |||| | | || ||| | Sbjct 531371 CGCCGGTGGTATTGGTGTAAACATCCATTGCATTCGACC-----TACG---GGCTCTTAC 531320 Query 53465 ATCAAGGGGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAA 53523 ||| ||||||||||| | || ||| || ||||| || ||||| || || |||||||| Sbjct 531319 ATCGCCGGGACGAACGG-GACGTCGAACGGTATCGTTCCCATGCTGCGAGTTTTCAACAA 531261 Query 53524 CACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCT 53583 ||| || || |||||| ||||||| || || || || | ||||||||||| || Sbjct 531260 CACCGCTCGCTACGTCGACCAGGGCGGCAACAAACGACCCGGCGCTTTCGCCATCTATCT 531201 Query 53584 CGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGA 53643 |||||||||||||| ||| ||| | ||||| | || || ||| || || ||| Sbjct 531200 CGAGCCGTGGCACGGCGATATTTTCGAGTTCTTGGATCTCCGTAAAAACACTGGCATCGA 531141 Query 53644 AGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 ||||||||| ||| ||||| || ||| || ||||||||||||||||| |||||| || Sbjct 531140 AGAGATGCGTGCCCGCGACCTCTTCTAC-GCCCTGTGGATTCCGGACCTGTTCATGAAAC 531082 Query 53703 AGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC 53758 || || | ||| |||||| || ||||| || || |||||| |||||| Sbjct 531081 GCGTTGAACAAAACGGCAAGTGGTCGCTCATGTGTCCCAATACGTGCCCGGGCCTC 531026 Score = 105 bits (116), Expect = 7e-18 Identities = 286/430 (67%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 ||||| ||||||| ||||| || || || |||||||||||| | |||||||||||| | Sbjct 530317 CTGCTGCTGGCGCCCATGCCCACAGCATCAACGGCTCAGATCCTCGGCAACAACGAGTCC 530258 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGC--GCCGGACCCTAGCAGGTGAGTTTGTCA 55610 | ||||||||||||| |||| | || ||| | || || | ||||| || | Sbjct 530257 ATTGAGCCGTACACGAGCAACGTGTA--TGCCAGACGAGTTCTCTCCGGTGAATTCCAAA 530200 Query 55611 TGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCA 55670 | |||| | |||||| | ||||| || | | | |||||| ||| | Sbjct 530199 TCGTCAATCACCACCTCCTGAAGGATCTCACCGACTTGGGCCTCTGGAACGAAACGATGA 530140 Query 55671 AGACGGATATTGT-GC--GGAACGGGGGGTCCGTCCAGAATCTGGAGATTCCTCTGCGTC 55727 ||| || |||| || | ||| || ||||| |||||||| || || ||| Sbjct 530139 AGAACGAGCTTGTCGCTAGCAAC---GGTTCCGTGCAGAATCTTGATATCCCTGATAAAT 530083 Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 | || | | |||||||| || ||||| | || ||||||| | || | ||| | Sbjct 530082 TGAAACAACTCTACCGGACCGTTTGGGAACTGCCTCAGAAGAACATCATCAAAATGGCGG 530023 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT---CTTCATGGAGAATC 55844 |||| ||||| |||| |||||| ||| ||| ||||||||||| |||| |||| | Sbjct 530022 CTGACCGTGGGGCGTTCATCGATCAGAGCCAATCTCTGAACATCCACTTCGCCGAGA--C 529965 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | | | ||| | | |||||||| || ||||| ||||| || | || || | Sbjct 529964 CAAC-TTCGGGAAGCTCACGTCGATGCATTTCTACGGCTGGAAACTCGGTTTGAAAACCG 529906 Query 55905 GTATGTACTA 55914 | |||||||| Sbjct 529905 GGATGTACTA 529896 >seq2113 Length=941915 Score = 100 bits (110), Expect = 3e-16 Identities = 256/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| ||||| || || ||||||||||| || | |||||| | || || ||| || Sbjct 271296 CCGGTTCCGATACCTTCGGCACCGTTGACGAGCACCATCGGAATGATGGGTAGGTAGAAA 271355 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAG---CC 151992 || || || | || || |||||| | | || |||||||| | || || | || Sbjct 271356 TCGGGTTCGATCTTCAGATTGTCATCGAAGAGATAATTCAAAACAGGATCATCGGACTCC 271415 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || ||| | |||| | | ||||||| ||||||||||||| | |||| Sbjct 271416 GG---GAACAGATGTCGCGCGAGCGGACTCAGTTTGGTGAAGATGTATCTCGGCGAGGCC 271472 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 | |||||||| ||| || || || || ||||| || ||| | | | ||||| | Sbjct 271473 GAGTCCTTGCCTCCTTGGAGTCGAGTACCGAACTGACCGATGGGTTGCAACAAGTTGACG 271532 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 || ||| ||| || |||||||| ||||||||||| || || | || | ||| Sbjct 271533 TTATTGCTGCCGACAAAATTCTGCGCCAAATTCACGATTGTCATCATGAGCGACTGTTCG 271592 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC- 152231 ||||| || || |||| | || |||| | || ||||| || || || |||| || Sbjct 271593 CCGTGATGGTAGGCCGACATTTCGGCGACCGAACCAGCCAATTGAGCGACTTTCACTTCT 271652 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGG 152257 ||| | |||| |||||| ||||| Sbjct 271653 CGT-TTATCGTTCCTCTTGAAACAGG 271677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200876317800