Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2150 118 9e-22 >seq2150 Length=3231181 Score = 118 bits (130), Expect = 9e-22 Identities = 373/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 || |||||||| | ||||| | |||| ||| | |||| |||||||| | | | Sbjct 2912479 AGGGTGGGAAAATCCTTCGGCTCTCGTTCGATCTGCTTGCTCAGGGGTTCCACATGGTTC 2912420 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGTG--GACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 || |||| ||| | ||||| ||||||| || |||||||||| || || | || Sbjct 2912419 AGATAGATGTGGGTATCTCC--GGTTGTGTGGATGAACTCTCCCGTTTTCAGATCCGTAT 2912362 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 ||| || || |||| ||||| |||| || || ||||| || || || || || | Sbjct 2912361 AGTGGGCGATGATGTGGGTGAGTAGAGCATACGATGCTATGTTGAATGGAACTCCTAGAC 2912302 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 30071 | ||||| | || || || ||||| ||||| || || ||||| |||||||||| Sbjct 2912301 CAATGTCGGCGCTCCGTTGATACAGCTGGCACGATAGTTCCCCGTCAGCGACGTAAAACT 2912242 Query 30072 GACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30130 | || | | |||||| ||||| || |||||| | ||||||| ||||| || Sbjct 2912241 G-TGCAAGACAGTGGCAAGGAGGTAGTGCCATGCTCGGGAGGTCTTTGACATTCCAAGCA 2912183 Query 30131 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA--CGGCGTTTTGCA 30188 | | ||| | ||| | ||| | |||| | || | | || | || | | || | Sbjct 2912182 GAGAGGATCAAGCGTCGGTCAT-TGGGATCTTTCCGTATAGCTTCAATCAACTGGCTG-A 2912125 Query 30189 GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30248 || || || |||| ||| || | |||||| |||| |||||||||| Sbjct 2912124 CTTGGTCGGTGCCTTGACCCGTGTAATCGGTGTGCATGTCAATGTAAGTGGCTCCGAAAT 2912065 Query 30249 GCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCC 30308 ||| ||| ||||| ||||| || || || || || || || || | | ||| ||| Sbjct 2912064 GCCGCCATTGGAAGCCGTAAACAGGCCCGAGATCACCTTCCTCGCGAGCCGAGAAACCCA 2912005 Query 30309 TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGA 30368 ||||||| ||| ||| || || || |||||||||||| | || ||| | || | Sbjct 2912004 GTTTGTCCAGAAACGCTCGAGAGCCATTAGCGTCCCAGATCGTGACATTTTTCGCTGATA 2911945 Query 30369 GCTCTTTGGAGTTTGTGGACCCTCTGACGA 30398 ||| || | || ||||| || |||| || Sbjct 2911944 ACTCCTTCGCATTGGTGGAGCCCCTGAGGA 2911915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406299451331412