Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2156 114 8e-21 >seq2156 Length=2198910 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| || || ||||| | ||||| |||||||| ||||| || Sbjct 1776595 TCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAG 1776536 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||||| || ||||| | ||| |||||||| ||||| | || ||| | Sbjct 1776535 ATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTGAATCTTG-GCCTTGACGTT 1776477 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| | ||| || || | ||| || ||||| ||||| | ||||||||| Sbjct 1776476 TTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCAC 1776417 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 1776416 AAAAATCTGCAT 1776405 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| | ||||| || | || ||||||||| || || || || || Sbjct 1777316 GCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGA 1777257 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| || |||||||| || || || | |||||| |||||||| || Sbjct 1777256 CAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGG 1777197 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||||||| || | | || ||||| | ||| || Sbjct 1777196 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATCGTGTCAGAGGGCTCGAC 1777137 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || ||||| || || |||| || || || |||||||||||| Sbjct 1777136 CTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCATG 1777088 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| ||| |||||| || || || ||||| || ||||| Sbjct 1775837 AGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGT 1775778 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| || || || || || | ||||| ||||| || || | |||||| Sbjct 1775777 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCC 1775718 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| || |||| || Sbjct 1775717 TTGTCTTGGATC-TTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGT 1775659 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | ||| ||||| || |||||||| Sbjct 1775658 GATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||| ||| ||| ||||| ||||| ||||| | ||| || Sbjct 1778157 AGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGA 1778098 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | |||||| Sbjct 1778097 CCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCC 1778038 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || ||| | || ||||| ||| ||||||| ||| Sbjct 1778037 TTGTCCTGGATC-TTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGT 1777979 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||| ||||||||| Sbjct 1777978 GATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATG 1777939 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||| ||| || ||| ||||| || ||||| || || || Sbjct 1777088 GCCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1777029 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || |||| ||||| ||||| || || || || | |||||||| ||||| || Sbjct 1777028 CAACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGG 1776969 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| |||| || | ||| ||| | || ||||| || | Sbjct 1776968 AATTCCCTCCTTGTCTTGGATC-TTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGA 1776910 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || ||||| || || || | || || || || |||||||| Sbjct 1776909 CCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| |||||| ||| ||||| || ||||| || || Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || ||||| || || || || | ||||||||||| ||||| Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | |||||||| || ||| ||| | || ||| | || ||||| || | || | Sbjct 1776739 ATGCCCTCCTTATC-CTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGT-TCGA 1776682 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || ||||| ||||| || | ||||| || || ||||||||| Sbjct 1776681 CTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1776632 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | |||||| || || || || ||||| ||||| || Sbjct 1778393 CCGCCGCGAAGACGAAGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGAC 1778334 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| |||||||| || || || || | ||| || ||||| || || Sbjct 1778333 AAGGTACGGCCGTCTTCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGGG- 1778275 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||| | || || | || ||||| | || || Sbjct 1778274 ATTCCTTCCTTGTCTTGGAT-TTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTAC 1778216 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || ||||| || ||||||||||| Sbjct 1778215 TTCGAGAGTGATGGTTTTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | |||||| || ||||||||| ||||| || || || || || Sbjct 1777929 AGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCGA 1777870 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| || || || || | ||||||||||| ||||| | |||||| Sbjct 1777869 CCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTCC 1777810 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||| | ||| ||| | || ||||| |||| || || || | | Sbjct 1777809 TTGTCCTGGAT-TTTGGCTTTCACGTTCTCGATGGTGTCGGACGCT-TCGACCTCGAGCG 1777752 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||||||| || || | || ||||| || || |||||| Sbjct 1777751 TGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCATG 1777711 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 ||||| ||||| | ||||| ||| || || ||| || || ||||| || || || Sbjct 1776072 CCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGC 1776013 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || ||||||| ||||| || || || || || |||||||||||||| || || | Sbjct 1776012 GTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATG 1775953 Query 34603 CCCTCCTTGTCTGTGATCTTTTG-TTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTT 34660 ||||| ||||| || ||| | || ||| | ||| ||||| | |||||| | Sbjct 1775952 CCCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGT 1775893 Query 34661 CCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | | ||| || | ||| || || | || || || ||||||||||| Sbjct 1775892 CGAGGGTGAT-GGTTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| |||||| ||| || |||||||| || || || || || |||| || ||||| Sbjct 1776380 ATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTG 1776321 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | ||| ||||| || || | |||||||||||| ||| || Sbjct 1776320 CTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGAT-TT 1776262 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | || ||||| ||||||||| | || || ||||| || | Sbjct 1776261 TCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAG 1776202 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || ||||| || |||||||| Sbjct 1776201 TCAGTGTCTTCACGAAGATCTGCAT 1776177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721119119163