Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2156 156 4e-33 >seq2156 Length=2198910 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || ||||| || || || || || Sbjct 1777088 CATGCAGATTTTCGTCAAGACCCTAACGGGCAAGACGATCACTCTGGAGGTCGAGCCCTC 1777147 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| ||| || |||||||| |||||||| ||||| || || Sbjct 1777148 TGACACGATCGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCGGACCA 1777207 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || ||||| | |||||| || || | ||||| ||||| Sbjct 1777208 GCAGCGTCTGATTTTCGCTGGTAAACAGCTCGAAGACGGTCGCACGCTGTCCGACTACAA 1777267 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||||||||| || |||||| | ||| | || || ||||| Sbjct 1777268 TATCCAAAAGGAGTCGACCTTGCACTTGGTTCTCCGTCTCCGAGGAGGCAT 1777318 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| || | || || || || || || || ||| Sbjct 1776405 ATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTCC 1776464 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| ||||| || || || |||||| Sbjct 1776465 GACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCAA 1776524 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 1776525 CAGCGACTGATCTTCGCCGGCAAACAACTCGAAGA-AGGACGAACCCTCTCCGATTACAA 1776583 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| ||||| | || |||| | || | || || ||||| Sbjct 1776584 CATCCAGAAGGAATCGACGCTTCACCTGGTGCTCCGCCTCCGCGGAGGCAT 1776634 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || || ||| | || || |||||||| |||||||| Sbjct 1776632 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTC 1776691 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || || |||||||| || || || ||||| || ||||| || Sbjct 1776692 CGACACGATCGAGAACGTGAAGGCGAAAATTCAGGATAAGGAGGGCATCCCGCCCGACCA 1776751 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| |||||||| | || ||| || ||| | || ||||| Sbjct 1776752 ACAGCGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAA 1776811 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| || ||||| || ||| | ||| |||| |||| Sbjct 1776812 CATCCAGAAGGAATCCACCCTCCATCTGGTGCTGCG 1776847 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || | || || ||||| ||| Sbjct 1776861 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTCGAACCTTCC 1776920 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | |||||| || || |||||||| || || || || || |||||| Sbjct 1776921 GACACGATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCTCCGGATCAA 1776980 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| | || | ||| |||||||| | || ||| | ||| |||| ||||| ||||| Sbjct 1776981 CAGCGACTCATCTTCGCTGGCAAACAGCTTGAGGAC-GGTCGCACGTTGTCCGACTACAA 1777039 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| | ||| | || || ||||| Sbjct 1777040 CATCCAGAAGGAATCCACCCTGCATCTGGTCCTCCGTCTTCGCGGAGGCAT 1777090 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || ||||| | || || || || ||||| | ||| Sbjct 1775848 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAACC-ATCACCCTCGACGTGGAGGCCTCC 1775906 Query 27048 GACTCGATTGAGATGGTCAAA--CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| ||||||| | ||||| | |||| | || |||||||| ||||| || ||||| | Sbjct 1775907 GACACGATTGAAAACGTCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGACC 1775966 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||||||||| || | ||| || || ||| | |||||| || || | ||| |||| Sbjct 1775967 AACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTACA 1776026 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||| || || ||||||||| | ||| |||| Sbjct 1776027 ACATCCAGAAAGAGTCGACCCTGCATCTGGT 1776057 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || || ||| | || || || || || |||||||| Sbjct 1777316 CATGCAAATTTTCGTCAAGACCCTCACGGGTAAGACCATCACGCTCGAGGTTGAACCGTC 1777375 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| ||| ||||||||||| || ||||| || |||||||| Sbjct 1777376 GGACACAATCGAGAACGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCGCCCGATCA 1777435 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | |||||| || || | ||||| | ||| | || || |||| Sbjct 1777436 GCAACGTCTCATCTTCGCCGGGAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAG 1777495 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 |||||| ||||| ||||| | ||| | || | ||| |||| ||| Sbjct 1777496 CATTCAGAAGGAATCGACTCTTCATCTCGTCCTTCGTCTGCGAGGT 1777541 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||| ||| | || || || ||||| || ||||| Sbjct 1777939 CATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTC 1777998 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || ||| || || ||||| || || || || || || || Sbjct 1777999 GGACACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 1778058 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || || || || | ||||||||| Sbjct 1778059 GCAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAA 1778118 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| ||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 1778119 CATCCAAAAAGAGTCCACCCTCCACCTGGTTCTTCGTCTGCGTGGTGGGAT 1778169 Score = 118 bits (130), Expect = 9e-22 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || || | || ||||| ||||| ||| | || Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||||| |||||||| ||||| || || ||||| || Sbjct 1778228 GACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCC-CCCGACCAG 1778286 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| ||||||||| | |||||| | ||| | || ||||||||| Sbjct 1778287 CAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAAC 1778346 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || || | ||| | ||| | ||| | || || || Sbjct 1778347 ATCCAGAAAGAATCTACGCTCCATCTCGTTCTTCGTCTTCGCGGCGG 1778393 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| |||||||| | || || || || || || | || Sbjct 1775392 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACGCTCGATGTCGAGCTCGCC 1775451 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| || |||||||| || || || || ||||| Sbjct 1775452 GACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCGGATCAG 1775511 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || ||||| | |||||| | ||| |||| || |||||| Sbjct 1775512 CAACGTCTGATCTTCGCTGGAAAACAGCTTGAAGACGGCCGAACCCTTTCGGACTACAAC 1775571 Query 27168 ATTCAAAAGGAGTCGAC 27184 || |||||||||||||| Sbjct 1775572 ATCCAAAAGGAGTCGAC 1775588 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || || | || || || |||||||| || || Sbjct 1776177 ATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTCG 1776236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| ||||| |||||||| || ||||| || ||||| || Sbjct 1776237 GACACGATCGAGAACGTCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACCAG 1776296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| || ||| | || ||| || || | ||| |||||| Sbjct 1776297 CAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACAAC 1776356 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| || ||||| || Sbjct 1776357 ATTCAGAAAGAGTCCAC 1776373 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||| || || || | || || || || || ||| |||| Sbjct 1777711 CATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTC 1777770 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || ||| ||||| || ||||| || || || || ||||| || Sbjct 1777771 CGACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCA 1777830 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || ||||| |||| ||| || || | ||| ||||| Sbjct 1777831 ACAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAA 1777890 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||||||||| | ||| | || | || | || || ||||| Sbjct 1777891 CATCCAAAAGGAGTCGACACTCCATCTCGTGCTTCGACTCCGTGGAGGCAT 1777941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906379942720