Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2156 122 7e-23 >seq2156 Length=2198910 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| |||||| ||| || || ||||| |||||| || |||||| |||| || Sbjct 1775829 CACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCCTC 1775770 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || ||||| || || || || ||||||||||||| ||| | || ||| ||||| Sbjct 1775769 AAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTG 1775710 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | | | | ||| ||| |||||| || |||| |||||| | || Sbjct 1775709 GATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTCTT 1775650 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||||||| || || ||||| ||||| Sbjct 1775649 TCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | ||| | || | || ||||| ||| ||||| || || || || | | Sbjct 1775618 CCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1775559 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| ||||||||||| || || || || ||||| ||||| || | || Sbjct 1775558 AGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGG 1775499 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA-CTCCAC 39236 | | |||||||||| |||||| || | || | | || ||| ||| ||| || Sbjct 1775498 ATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCG-GCGAGCTCGAC 1775440 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | |||||| |||| || || || ||||| || ||||||||||| || Sbjct 1775439 ATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | ||| | ||||| ||| || ||| || || || || || || || Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||||||||| || || || || ||||| ||||||| || Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| |||||| || | || | | ||| ||| || || || Sbjct 1776739 ATGCCCTCCTTATCCTGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACT 1776680 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || ||||| || ||||| || ||||| ||||| Sbjct 1776679 TCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||||||| || || |||||| | ||| || | || || Sbjct 1778148 ACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCG 1778089 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || ||||||||||||||||| | ||| | | ||| |||||| | Sbjct 1778088 AGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 1778029 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || || ||| || |||| ||||| | || Sbjct 1778028 ATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTTC 1777969 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||| ||||| Sbjct 1777968 CCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | ||| | ||| || || ||| ||||| || || || || Sbjct 1777942 CATGCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTC 1777883 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || |||| || |||||||| || || || || || ||||| ||||||| Sbjct 1777882 GCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGG 1777823 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||| |||||| |||||| ||| | || | | || ||| || || Sbjct 1777822 CGGGATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTC 1777763 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | |||||| ||||||| || || || || || ||||||||||| Sbjct 1777762 GACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || ||| || || || |||| || || || Sbjct 1776380 ATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCGAGTTG 1776321 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || | | ||||||||||| || | || ||| ||||| |||||| Sbjct 1776320 CTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATTTT 1776261 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | |||| || | | ||| || | |||||| || | |||||| ||||||| || Sbjct 1776260 CGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGTGATTGTTTTTCCAGT 1776201 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || ||||| ||||| Sbjct 1776200 CAGTGTCTTCACGAAGATCTGCAT 1776177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534025222643