Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2156 127 1e-24 >seq2156 Length=2198910 Score = 127 bits (140), Expect = 1e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| ||||| |||||||| ||||| ||||| || || || | Sbjct 1776404 AATGCAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTC 1776463 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || || ||| ||||| ||||| | ||||| ||||| Sbjct 1776464 CGACACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCA 1776523 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||||||||| ||||| | ||| || | ||||||||| Sbjct 1776524 ACAGCGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAA 1776583 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 1776584 CATCCAGAAGGAATCGAC 1776601 Score = 125 bits (138), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||||||||| ||| | ||||| ||||| || || || | Sbjct 1775847 AATGCAGATTTTCGTCAAGACCCTCACGGGCAAACC-ATCACCCTCGACGTGGAGGCCTC 1775905 Query 23670 GGACACTGTTGAAATATTAAAA--CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||| |||||| | || | |||| | |||||||| || | || || || Sbjct 1775906 CGACACGATTGAAAACGTCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGAC 1775965 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || || || || || ||||| ||||||| ||||| | |||| ||| Sbjct 1775966 CAACAGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTAC 1776025 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 1776026 AACATCCAGAAAGAGTCGAC 1776045 Score = 122 bits (134), Expect = 6e-23 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||| | ||||||||||| |||||||||||||| || || | Sbjct 1778168 ATGCAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCT 1778227 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||||| ||||| ||||| | || || || || Sbjct 1778228 GACACCATCGAGAATGTCAAGGC-CAAAATCCAAGACAAGGAAGGAAT-CCCCCCGACCA 1778285 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || ||||||||||| ||||||| || || || |||||||| Sbjct 1778286 GCAACGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTACCTTGTCGGATTACAA 1778345 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||| || || | ||| | ||| Sbjct 1778346 CATCCAGAAAGAATCTACGCTCCATCTCGTT 1778376 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| |||||||||||||| ||||| || || | | Sbjct 1777712 ATGCAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCC 1777771 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| ||||| || ||| | ||||| || ||| Sbjct 1777772 GACACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAA 1777831 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || ||||| ||||| |||| |||||| | |||| |||||| Sbjct 1777832 CAGCGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAAC 1777891 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || ||||| ||||| ||| | ||| Sbjct 1777892 ATCCAAAAGGAGTCGACACTCCAT 1777915 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || ||||||||||| || || || || | Sbjct 1777089 ATGCAGATTTTCGTCAAGACCCTAACGGGCAAGACGATCACTCTGGAGGTCGAGCCCTCT 1777148 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||| || ||||| ||||| | || || || || Sbjct 1777149 GACACGATCGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCGGACCAG 1777208 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || ||||| || ||||||| ||||| | ||| ||||| Sbjct 1777209 CAGCGTCTGATTTTCGCTGGTAAACAGCTCGAAGACGGTCGCACGCTGTCCGACTACAAT 1777268 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || || || || ||| | | | |||||||| Sbjct 1777269 ATCCAAAAGGAGTCGACCTTGCACTTGGTTCTCCGTCTCCGAGGAGG 1777315 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || ||||| || | || Sbjct 1777940 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCG 1777999 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| || ||||| || || | || ||||| || Sbjct 1778000 GACACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 1778059 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | ||||| || ||||||||||| Sbjct 1778060 CAGCGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAAC 1778119 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 1778120 ATCCAAAAAGAGTCCAC 1778136 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || || |||||||| ||||| |||||||| || | | Sbjct 1776176 AATGCAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTC 1776235 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || ||||| ||||| || || | || || || || Sbjct 1776236 GGACACGATCGAGAACGTCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACCA 1776295 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| || |||| ||||| | |||| ||||| Sbjct 1776296 GCAGAGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACAA 1776355 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 1776356 CATTCAGAAAGAGTCCAC 1776373 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || |||||||| || ||||| || | | Sbjct 1776633 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTCC 1776692 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| || || || || | ||||| || ||| Sbjct 1776693 GACACGATCGAGAACGTGAAGGCGAAAATTCAGGATAAGGAGGGCATCCCGCCCGACCAA 1776752 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || |||||||| || || |||| ||||| | || |||||| Sbjct 1776753 CAGCGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAAC 1776812 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 1776813 ATCCAGAAGGAATCCAC 1776829 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| | || || || | | Sbjct 1776861 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTCGAACCTTCC 1776920 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || || ||||| || || | || || |||||| Sbjct 1776921 GACACGATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCTCCGGATCAA 1776980 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || |||||||| || || |||| ||||| || ||| |||||| Sbjct 1776981 CAGCGACTCATCTTCGCTGGCAAACAGCTTGAGGACGGTCGCACGTTGTCCGACTACAAC 1777040 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 1777041 ATCCAGAAGGAATCCAC 1777057 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 1777317 ATGCAAATTTTCGTCAAGACCCTCACGGGTAAGACCATCACGCTCGAGGTTGAACCGTCG 1777376 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| ||||| || || | ||||| ||||| Sbjct 1777377 GACACAATCGAGAACGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCGCCCGATCAG 1777436 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || || ||||| | ||||| | || |||| | Sbjct 1777437 CAACGTCTCATCTTCGCCGGGAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAGC 1777496 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 1777497 ATTCAGAAGGAATCGAC 1777513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000491803188