Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2150 116 3e-21 >seq2150 Length=3231181 Score = 116 bits (128), Expect = 3e-21 Identities = 368/567 (65%), Gaps = 4/567 (1%) Strand=Plus/Minus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 27159 || |||||||| | ||||| | |||| ||| | |||| |||||||| || | | Sbjct 2912479 AGGGTGGGAAAATCCTTCGGCTCTCGTTCGATCTGCTTGCTCAGGGGTTCCACATGGTTC 2912420 Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 || |||| ||| | ||||| ||||||| |||||||||| || || | || | Sbjct 2912419 AGATAGATGTGGGTATCTCCGGTTGTGTGGATGAACTCTCCCGTTTTCAGATCCGTATAG 2912360 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || || |||| ||||| |||| || || ||||| || || || || || || Sbjct 2912359 TGGGCGATGATGTGGGTGAGTAGAGCATACGATGCTATGTTGAATGGAACTCCTAGACCA 2912300 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| | || || || ||||| ||||| || || || || ||||||||||| Sbjct 2912299 ATGTCGGCGCTCCGTTGATACAGCTGGCACGATAGTTCCCCGTCAGCGACGTAAAACTGT 2912240 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399 | |||||| ||||| || |||||| | ||||||| ||||| || | Sbjct 2912239 GCAAGACAGTGGCAAGGAGGTAGTGCCATGCTCGGGAGGTCTTTGACATTCCAAGCAGAG 2912180 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA--CGGCGTTTTGCAGCT 27457 | ||| | ||| | ||| | |||| | || | | || | || | | || | | Sbjct 2912179 AGGATCAAGCGTCGGTCAT-TGGGATCTTTCCGTATAGCTTCAATCAACTGGCTG-ACTT 2912122 Query 27458 GATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 27517 | || || |||| ||| || |||||| |||| ||||||||||||| Sbjct 2912121 GGTCGGTGCCTTGACCCGTGTAATCGGTGTGCATGTCAATGTAAGTGGCTCCGAAATGCC 2912062 Query 27518 TCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 27577 ||||||||| ||||| || || || || || || || || | | ||| ||| | Sbjct 2912061 GCCATTGGAAGCCGTAAACAGGCCCGAGATCACCTTCCTCGCGAGCCGAGAAACCCAGTT 2912002 Query 27578 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 27637 |||||| ||| ||| || || || |||||||||||| | || ||| | || | || Sbjct 2912001 TGTCCAGAAACGCTCGAGAGCCATTAGCGTCCCAGATCGTGACATTTTTCGCTGATAACT 2911942 Query 27638 CTTTGGAGTTTGTGGACCCTCTGACGA 27664 | || | || ||||| || |||| || Sbjct 2911941 CCTTCGCATTGGTGGAGCCCCTGAGGA 2911915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369497243051141