Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq674 176 1e-39 >seq674 Length=2717 Score = 176 bits (194), Expect = 1e-39 Identities = 440/659 (67%), Gaps = 36/659 (5%) Strand=Plus/Plus Query 686 CCATCAGAGTGGGCGCAGAACCATATCCGCATCCCTGCTGGTAACGCCGTTCCAGGACCG 745 || || |||||||| || || || ||||| || | || ||||| || || ||| Sbjct 320 CCGTCCGAGTGGGCAGAGCGGCACATACGCATTCCCGAAGGCAACGCAGTGCCGGGATTA 379 Query 746 TTGCGCCTGGATAACGCGCCTTACCAGCGTGAACCAATGGATATGCTGGTTGACCCGGAT 805 | ||| | | || || || ||| ||||| |||||||| | | | | || || Sbjct 380 TATCGCGTTGCAAATGCTCCAATCCAACGTGAGCCAATGGACCAGTTTATAAATCCTGAA 439 Query 806 TGCTACCGCGTTACCCTGATGTGGGGCGCGCAGGTTGGCAAAACCATGCTGGCACTGT-G 864 ||| | || || | |||||||||||||| ||| | || ||||| | | || || | | Sbjct 440 TGCCATCGTGTATCGCTGATGTGGGGCGCCCAGATCGGTAAAACGA--CATGCGCTTTAG 497 Query 865 CG-TGCAGGCGTAC---AGCGTAGCCGCAGAGCCGCGCAGCCAGATGATGATGCAGCCGT 920 || | |||| ||| | || ||| || | || ||| || |||||| | || || | Sbjct 498 CGGTACAGGGTTACGCAATCG-AGCAGCGG--CCACGCTCGCAAATGATGTTACAACCTT 554 Query 921 CACAGGATGAC-TTACGCACCTGGCTGGAAACCAAATTCAACCCGCTGG----------C 969 | || | ||| ||| | |||||||| ||||||||||||||||| ||| | Sbjct 555 CGCAAGGCGACCTTAAG-ACCTGGCTTGAAACCAAATTCAACCCTTTGGTTGACGCCTCC 613 Query 970 GGAAGAATGCGCGCCGGTGAACACGGCTATTGCCAAACCGCGTGGCCGTGACGGCGTGAA 1029 | || ||| ||||| || || |||| |||||||| || ||||| |||||||| Sbjct 614 GAAACAATCCGCGC------ACTCG----TTGCGAAACCGCGCGGTCGTGAAGGCGTGAA 663 Query 1030 CAACCAGAAAATGAAATCCTACCCTGGCGGGTTCATGATGTTCGCCTGGTCAGGATCACC 1089 ||| || | ||||| ||||||||||| || || ||||||| || ||| | || || | Sbjct 664 CAATCAAAGCATGAAGTCCTACCCTGGTGGATTTCTGATGTTTGCTTGGGCGGGTTCCAC 723 Query 1090 AAAGACCATGCGCGGGCGTTCCGCGCCGCTTATCGTTTGCGACGAGGTAGACGGATATGA 1149 || ||||||||||| ||||| ||||| || || |||||||| | ||||| || Sbjct 724 TCGAACAATGCGCGGGCGATCCGCTCCGCTCATTGTCTGCGACGAAATCGACGGTTACAG 783 Query 1150 ACTGACTAGCGAGGGGCACCCGGTTGGCCTTCTGTGGCAGCGTTCTGCCACGTTCGGTGA 1209 ||| ||| |||||||| ||| || | |||||||| | || || || || || Sbjct 784 CGCGACAGACGAAGGGCACCCAGTTTCTCTCATCTGGCAGCGGGCAGCAACCTTTGGCGA 843 Query 1210 CCAGCGTTTCCTACTGGAAA--TCAGCACCCCTACCATCAAGGGTGAATCCTACATTGAA 1267 | || || | | |||| ||| ||||| || | || | || ||||| ||| Sbjct 844 TGAACGCTTTTTGATCGAAATTTCAACACCC--ACACTGAAAGACTTCTCTTACATAGAA 901 Query 1268 AAAGCCTACGACATGGGCGACCAGCGGCATTATTTCGTCTGCTGCCCGCACTGTGACGA 1326 | ||| | || || ||||| ||| || || |||| | ||||| |||||| |||| Sbjct 902 ACAGCTTTTGAGGCAGGGGACCAACGGTTTTTTTACGTCCGATGCCCACACTGTCACGA 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134012481326160