Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2156 140 7e-28 >seq2156 Length=2198910 Score = 140 bits (154), Expect = 7e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || ||||| ||||| |||||||| || |||||||| ||| | || | Sbjct 1776395 GAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGCGTGCG 1776336 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || |||||||||||||| | |||||||||||| | | || || || Sbjct 1776335 ACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATGCCCTC 1776276 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| ||||| ||||| |||| | |||| ||| ||| ||||| || || Sbjct 1776275 CTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACTTCGAGCGT 1776216 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || ||||||||||||| ||||||| Sbjct 1776215 GATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCATT 1776176 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || ||||| ||||| |||||||||||||| | || || | || ||| Sbjct 1778378 AGAACGAGATGGAGCGTAGATTCTTTCTGGATGTTGTAATCCGACAAGGTACGGCCGTCT 1778319 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| ||||| | |||||||| | | |||||||||||| ||| Sbjct 1778318 TCGAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCGGGGG-GATTCCTTCCTTGTCT 1778260 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| |||| | | |||| || |||||||| ||||| || ||| Sbjct 1778259 TGGATTTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACTTCGAGAGTGATGGTT 1778200 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | || || ||||| | |||||| Sbjct 1778199 TTTCCCGTCAAGGTTTTGACGAAAATCTGCAT 1778168 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| |||||||||||||| || | | |||| Sbjct 1775610 GAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTTCG 1775551 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || ||| || |||||||| || | ||||| |||| | |||||| || Sbjct 1775550 GCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGGAGGGATTCCCTC 1775491 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || || ||||| || ||| |||| | | |||| | ||| || || || || Sbjct 1775490 TTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTCGACATCGAGCGT 1775431 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| |||||||| || ||||||| |||||||| Sbjct 1775430 GATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATTTT 1775389 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || ||||| || || || || |||||||||||||||| | |||| Sbjct 1776623 GAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCG 1776564 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || ||| ||||||||||| || | ||| || || | || |||||||| Sbjct 1776563 TCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTC 1776504 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | |||| || ||| || || || || Sbjct 1776503 CTTGTCCTGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGT 1776444 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || ||||| || ||||| || | ||||||| Sbjct 1776443 GATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCATT 1776404 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| || || ||||| |||||||||||||| ||| | ||| | Sbjct 1777930 GAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTGCG 1777871 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| || ||||| || || | ||| ||||| | || ||| || || Sbjct 1777870 ACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGGGATACCCTC 1777811 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| ||| || |||| | | |||| || || || || || || Sbjct 1777810 CTTGTCCTGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGACCTCGAGCGT 1777751 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||||||||||| ||||| Sbjct 1777750 GATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 1777712 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| |||||||| ||||| |||| | || | || ||||| || ||| || Sbjct 1777285 GTCGACTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCA 1777226 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || || | ||||||||||| | ||| |||||||| ||||| || ||| ||| Sbjct 1777225 GCGAAAATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 1777166 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || ||| || || ||||| || || |||||||| || ||| Sbjct 1777165 ACATTTTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTC 1777106 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | |||||| Sbjct 1777105 TTGACGAAAATCTGCAT 1777089 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||||||||||||||||||| || || | ||||| Sbjct 1778151 AGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCC 1778092 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| ||||| | ||||||||| | | || || ||||| || Sbjct 1778091 TCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 1778032 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| || || |||| | | |||| || ||| ||||| || || || || Sbjct 1778031 TGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTC 1777972 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||||||| |||| |||||| Sbjct 1777971 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 1777940 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || || || || ||||||||||| |||| || || | || || Sbjct 1777073 GAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTC 1777014 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || |||||||| || | ||| || |||| | ||||| ||||| || Sbjct 1777013 CTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTC 1776954 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | |||| ||| || || || | || || || Sbjct 1776953 TTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGT 1776894 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| ||||||| |||||| Sbjct 1776893 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||||||||| || || || || ||| |||| || | | || | |||||| Sbjct 1777528 AGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCT 1777469 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||||||||| || | ||||| || | || || || ||||| ||| Sbjct 1777468 TCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCT 1777409 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||||| |||| | |||| || || || || || || || || Sbjct 1777408 TGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTC 1777349 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||| | ||||| Sbjct 1777348 TTACCCGTGAGGGTCTTGACGAAAATTTGCAT 1777317 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || || || || ||||||||||| || | || | || || Sbjct 1776844 AGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGGAGGGTGCGACCGTCC 1776785 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| |||| ||| ||||| | || ||| || ||||| || Sbjct 1776784 TCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGGATGCCCTCCTTATCC 1776725 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || || |||| | |||| || || |||||||| || || || Sbjct 1776724 TGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGACTTCAAGCGTGATCGTC 1776665 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||||| |||||| Sbjct 1776664 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1776633 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || ||||| || || |||||||| ||||||||||| ||| | || Sbjct 1776069 CTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTG 1776010 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | || ||||| || ||||| || |||||||| | | ||| ||||| | | || | Sbjct 1776009 CGACCGTCTTCGAGTTGCTTT--CCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGC 1775952 Query 152002 CTTCCTTTTCTTGAATTTTTTG--TTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTC 152059 | || || || || | |||| | ||||| | || | |||| || ||| || || Sbjct 1775951 CCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTC 1775892 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||||||||| ||||| ||||| | ||||||| Sbjct 1775891 GAGGGTGAT-GGTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATT 1775847 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || ||||| ||||||||| | |||| || || Sbjct 1775831 AGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTGAGGGTTCGTCCGTCC 1775772 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | || || ||||| ||| Sbjct 1775771 TCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCT 1775712 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | |||| || ||| || || | || || || Sbjct 1775711 TGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTCGACCTCCAACGTGATCGTC 1775652 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||||||||||| ||||||| Sbjct 1775651 TTTCCGGTCAGCGTCTTCACGAAGATCTGCATT 1775619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153788114059581