Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2156 138 8e-28 >seq2156 Length=2198910 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||| || || |||||| |||||| ||||| |||||||| Sbjct 1775850 CATTCCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATC 1775791 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| || || ||||| || || ||||||| |||||||| || | Sbjct 1775790 GCTGAGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGG 1775731 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||||| || | || ||||||| || || Sbjct 1775730 GGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCGATCGTGTCGGACGACTC 1775671 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||| ||||||||||| || || |||||||||||||| ||||| Sbjct 1775670 GACCTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| | ||| || || || || |||||||||||||||||| || Sbjct 1777942 CATGCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTC 1777883 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| |||||||| || || || || || | ||||| || || | Sbjct 1777882 GCTCAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGG 1777823 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| || || |||| | |||| | |||||||||| | || Sbjct 1777822 CGGGATACCCTCCTTGTCCTGGATTTTG-GCTTTCACGTTCTCGATGGTGTCGGACGCTT 1777764 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | ||| ||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1777763 CGACCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCATG 1777711 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| |||||||||||||||||| | | ||| | || || Sbjct 1778148 ACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCG 1778089 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | ||||||||| |||| || | || ||||| ||| Sbjct 1778088 AGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 1778029 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | | || || |||| || || ||||| Sbjct 1778028 ATCTT-TGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACTTCCAGGGTGATGGTCTT 1777970 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||| ||||| |||||| Sbjct 1777969 CCCGGTGAGGGTCTTCACAAAGATCTGCATG 1777939 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || ||| ||||| ||||||||||| |||| | ||| |||| || Sbjct 1777069 ACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAACGTGCGACCGTCCTCA 1777010 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || ||||| | ||||| ||||| | ||| | || ||||| || Sbjct 1777009 AGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATTCCCTCCTTGTCTTGG 1776950 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | || ||||||| | ||| ||||||| ||| |||||||| Sbjct 1776949 ATCTTG-GCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGACCTCCAACGTGATCGTCTT 1776891 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| |||||||| ||||| Sbjct 1776890 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||||||||| ||||| |||||||||||||||| ||| || | || || Sbjct 1776614 CACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCTTCTTC 1776555 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||| ||||||| ||||| ||||| | || | |||||||| ||| Sbjct 1776554 GAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCCTG 1776495 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | |||||||||| || || ||||| | || || || || Sbjct 1776494 AATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGACCTCGAGGGTGATTGTTTT 1776435 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| || ||||| || || ||||| Sbjct 1776434 TCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | || |||||| || || ||| ||||| ||||||||||| || Sbjct 1776863 CATACCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 1776804 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| ||| |||| || ||||| || || || ||||| | ||||| || || | Sbjct 1776803 CAGGAGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGG 1776744 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || ||| ||||| |||| | || ||||||| | || Sbjct 1776743 CGGGATGCCCTCCTTATCCTGAATTTTCGCCTTCAC-GTTCTCGATCGTGTCGGACGGTT 1776685 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| |||||||| ||||||||||| || |||||||| |||||| Sbjct 1776684 CGACTTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1776632 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| || ||| |||| || | ||| ||| | || || Sbjct 1777525 ACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGGGTGCGGCCATCTTCG 1777466 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||||||||| ||||| | ||| |||||||| | || | || ||||| || Sbjct 1777465 AGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATGCCCTCCTTGTCTTGA 1777406 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | || ||||| | | ||| ||||| | ||| || ||||| Sbjct 1777405 ATCTT-TGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTCGAGCGTGATGGTCTT 1777347 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||| ||||| ||||||||| Sbjct 1777346 ACCCGTGAGGGTCTTGACGAAAATTTGCATG 1777316 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | | || ||||| ||||| |||||||||||||||||| || Sbjct 1775622 CATTCCTCCTCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTC 1775563 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || ||||| || || || ||||||| ||| |||||||| | Sbjct 1775562 CGAAAGGGTTCGGCCGTCTTCAAGCTGTTTTCCAGCGAAGATCAGACGTTGCTGATCCGG 1775503 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || || || ||| || || ||||| | | |||||||||||| || Sbjct 1775502 AGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGCGAGCTC 1775443 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||| || || || || ||||| || || |||||||||||||| Sbjct 1775442 GACATCGAGCGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 1775392 Score = 114 bits (126), Expect = 9e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||| ||||| |||| || ||| |||| || ||||| || || || || Sbjct 1777280 CTCCTTTTGGATATTGTAGTCGGACAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAA 1777221 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| ||||||||| || | || | |||||||| || ||||| ||| | | Sbjct 1777220 AATCAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 1777161 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | || || ||||||| || |||||||| ||||| |||||||| || Sbjct 1777160 TTCGATCGTGTCAGAGGGCTCGACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGAC 1777101 Query 44326 GAAGATTTGCATG 44338 ||| || |||||| Sbjct 1777100 GAAAATCTGCATG 1777088 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| | || || || || ||| ||| || || |||||||| || Sbjct 1776407 CATTCCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTC 1776348 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || || ||||||||||| |||||||| | |||||| || | Sbjct 1776347 GCTGAGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGG 1776288 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| || || ||| ||| | |||| | || ||||| | | | Sbjct 1776287 AGGAATGCCCTCCTTGTCTTGGATTTTCGCCTTGAC-GTTCTCGATCGTGTCCGAAGGCT 1776229 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||| || || ||||| || || |||||||||||||| ||||| Sbjct 1776228 CCACTTCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCAT 1776177 Score = 100 bits (110), Expect = 2e-16 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 ||||| || | | |||||| || || || ||| || ||||||||||| ||| ||| Sbjct 1776072 CCTCTGAGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGC 1776013 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233 ||| |||| || || ||||| || || |||||||||||||| || || | ||| | Sbjct 1776012 GTGCGACCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATG 1775953 Query 44234 CCTTCCTTTTCCGTTATCTTCTG--CTTCAATGTTCCTATGGTGTCGGCGGATTCCACCT 44291 || || || ||| | || | ||| | || | || ||||||| || ||||| | Sbjct 1775952 CCCTCTTTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGT 1775893 Query 44292 CCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | || || || || |||||||||||||| ||||| || ||||| Sbjct 1775892 CGAGGGTGATGGT-TTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980699496187