Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2156 192 1e-43 >seq2156 Length=2198910 Score = 192 bits (212), Expect = 1e-43 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| ||||| |||||||| |||||||||||||| || ||| ||| Sbjct 1776408 CAGATTTTTGTGAAAACGCTCACCGGAAAAACAATCACCCTCGAGGTCGAGCCCTCCGAC 1776467 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| |||||||| || || || || || Sbjct 1776468 ACCATCGAAAACGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCGCCTGATCAACAG 1776527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| ||||| |||||||| ||| | || || ||||||| ||| || Sbjct 1776528 CGACTGATCTTCGCCGGCAAACAACTCGAAGAAGGACGAACCCTCTCCGATTACAACATC 1776587 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || || || Sbjct 1776588 CAGAAGGAATCGACGCTTCACCTGGT 1776613 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| |||||||| |||||||||||||| |||||||| ||| || ||| Sbjct 1777715 CAAATCTTCGTGAAGACTCTCACTGGAAAAACGATCACGCTCGAGGTCGAAGCGTCCGAC 1777774 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || || |||||||| || || ||||| || ||||| || Sbjct 1777775 ACCATCGAGAACGTGAAAGCCAAAATCCAGGACAAGGAGGGTATCCCGCCCGACCAACAG 1777834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| ||||||||||| || || || | ||||| ||| || ||| || Sbjct 1777835 CGACTCATTTTCGCTGGAAAACAGCTGGAGGACGGTCGCACTCTGAGCGACTACAACATC 1777894 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || ||||| ||||| || Sbjct 1777895 CAAAAGGAGTCGACACTCCATCTCGT 1777920 Score = 170 bits (188), Expect = 5e-37 Identities = 167/215 (78%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||||||||| || ||||| ||||| ||||| || || Sbjct 1775389 AAAATGC---AAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACGCTCGATGTCGAG 1775445 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | | |||||||| ||||| || || || || ||||||||||| |||||||||||| Sbjct 1775446 CTCGCCGACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCG 1775505 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| || |||||||| ||||||||||| ||||| || | || ||| | || Sbjct 1775506 GATCAGCAACGTCTGATCTTCGCTGGAAAACAGCTTGAAGACGGCCGAACCCTTTCGGAC 1775565 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| ||||||| || || || || || || || Sbjct 1775566 TACAACATCCAAAAGGAGTCGACGCTCCACCTCGT 1775600 Score = 170 bits (188), Expect = 5e-37 Identities = 165/208 (79%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || |||||||| ||||| ||||| || ||| ||| ||| Sbjct 1778171 CAGATTTTCGTCAAAACCTTGACGGGAAAAACCATCACTCTCGAAGTAGAAGCCTCTGAC 1778230 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || || || ||||| ||||||||||| || ||||||||| Sbjct 1778231 ACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCC-CCCGACCAGCAA 1778289 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || ||||| ||||| || ||||| |||||||| || | || |||| | ||||| ||| | Sbjct 1778290 CGTCTTATTTTCGCTGGCAAACAACTCGAAGACGGCCGTAC-CTTGTCGGATTACAACAT 1778348 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| |||||||| || || ||||| ||| Sbjct 1778349 CCAGAAAGAATCTACGCTCCATCTCGTT 1778376 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||| |||||||| ||| || ||| Sbjct 1777320 CAAATTTTCGTCAAGACCCTCACGGGTAAGACCATCACGCTCGAGGTTGAACCGTCGGAC 1777379 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||||||| ||||| || || || || || || |||||| Sbjct 1777380 ACAATCGAGAACGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCGCCCGATCAGCAA 1777439 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||||||||| | || || | || || | | | Sbjct 1777440 CGTCTCATCTTCGCCGGGAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAGCATT 1777499 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 1777500 CAGAAGGAATCGACTCTTCATCTCGT 1777525 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || |||||||| || ||||| || ||| ||| Sbjct 1777092 CAGATTTTCGTCAAGACCCTAACGGGCAAGACGATCACTCTGGAGGTCGAGCCCTCTGAC 1777151 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||| || ||||| ||||| ||||| ||||||||||| Sbjct 1777152 ACGATCGAAAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCGGACCAGCAG 1777211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || |||||||||||||| || | || || |||| || || || Sbjct 1777212 CGTCTGATTTTCGCTGGTAAACAGCTCGAAGACGGTCGCACGCTGTCCGACTACAATATC 1777271 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| || || || |||| |||| || Sbjct 1777272 CAAAAGGAGTCGACCTTGCA-CTTGGTT 1777298 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || |||||||| || || || || ||| Sbjct 1777943 CAGATCTTTGTGAAGACCCTCACCGGGAAGACCATCACCCTGGAAGTCGAGCCGTCGGAC 1778002 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| || || || || || |||||||| Sbjct 1778003 ACCATCGAGAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAG 1778062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || |||||||| ||||| | || | |||||| ||| || Sbjct 1778063 CGTCTTATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGAGCGATTACAACATC 1778122 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| || || || || || ||| Sbjct 1778123 CAAAAAGAGTCCACCCTCCACCTGGTT 1778149 Score = 140 bits (154), Expect = 8e-28 Identities = 165/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || ||| | ||||||||||| ||||| ||| ||| Sbjct 1775851 CAGATTTTCGTCAAGACCCTCACGGGCAAACC-ATCACCCTCGACGTGGAGGCCTCCGAC 1775909 Query 177984 ACCATCGAGAACGTCAAA--CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || || || |||||||| | ||| | ||||||||||| || || ||||| ||||| | Sbjct 1775910 ACGATTGAAAACGTCAAGGTCCAAAACTCCAGGACAAAGAGGGCATTCCTCCCGACCAAC 1775969 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | |||||||| ||||| || |||||||| || | || || ||| || ||| Sbjct 1775970 AGCGTTTGATCTTCGCTGGAAAGCAACTCGAAGACGGTCGCACGCTCAGCGACTACAACA 1776029 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || |||||||| || | | |||||| Sbjct 1776030 TCCAGAAAGAGTCGACCCTGCATCTGGTGCTCCGTCTCAGA 1776070 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || |||||||| || || || ||| || ||| Sbjct 1776636 CAGATCTTCGTCAAAACCCTCACGGGTAAGACGATCACGCTTGAAGTCGAACCGTCCGAC 1776695 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || |||||||| || || || ||||| || ||||| || Sbjct 1776696 ACGATCGAGAACGTGAAGGCGAAAATTCAGGATAAGGAGGGCATCCCGCCCGACCAACAG 1776755 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||||||||| || || | || || || || ||| || Sbjct 1776756 CGGCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGCACCCTCCTGGACTACAACATC 1776815 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || ||||| || || | ||| || Sbjct 1776816 CAGAAGGAATCCACCCTCCATCTGGTGCTGCGCCTCCGA 1776854 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || |||||||| ||||| ||||| ||||| || ||| Sbjct 1776180 CAGATCTTCGTGAAGACACTGACTGGAAAAACAATCACGCTCGAAGTGGAGCCTTCGGAC 1776239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| || || || ||||| || || || ||||| |||||||| Sbjct 1776240 ACGATCGAGAACGTCAAGGCGAAAATCCAAGACAAGGAGGGCATTCCTCCCGACCAGCAG 1776299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || || ||||| || || | || || ||| || ||| | Sbjct 1776300 AGGTTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGCACGCTCAGCGACTACAACATT 1776359 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||||||| || Sbjct 1776360 CAGAAAGAGTCCACTCTGCATCTCGT 1776385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203697100175934