Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2156 165 8e-36 >seq2156 Length=2198910 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| ||||| |||||| ||||||||| || || || ||| | Sbjct 1775846 CCTCCGCGCAGACGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAATCGCTG 1775787 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || |||||||| ||||| ||||| ||||| ||||| | |||| Sbjct 1775786 AGGGTTCGTCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 1775727 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||||| || | | |||||| |||||| || Sbjct 1775726 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CGTTTTCGATCGTGTCGGACGACTCGAC 1775668 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| ||||| || || ||||||||||| ||||| |||||||| Sbjct 1775667 CTCCAACGTGATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 1775620 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||||||||| ||| |||||||| ||||| |||||||| Sbjct 1777088 GCCTCCGCGAAGACGGAGGACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1777029 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| || ||||| ||||| ||||| || || |||||||| |||| || Sbjct 1777028 CAACGTGCGACCGTCCTCAAGCTGTTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGG 1776969 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||| | || | || |||| ||| | | |||||| | || | Sbjct 1776968 AATTCCCTCCTTGT-CTTGGATCTTGGCTTTGACGTTTTCGATCGTGTCGGAAGGTTCGA 1776910 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 1776909 CCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 1776861 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||| || ||| |||||||| ||||| ||||| | Sbjct 1776859 CCTCCTCGGAGGCGCAGCACCAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCAGG 1776800 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||| ||||| ||||| || || ||||||||||| | || Sbjct 1776799 AGGGTGCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGCCGCTGTTGGTCGGGCGGG 1776740 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| |||| | ||||| | | |||||| || || || Sbjct 1776739 ATGCCCTCCTTATCC-TGAATTTTCGCCTTCACGTTCTCGATCGTGTCGGACGGTTCGAC 1776681 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| ||||| |||||||| || || || ||||| ||||||||| Sbjct 1776680 TTCAAGCGTGATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 1776632 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| ||| ||| ||||||||||| |||||| | Sbjct 1776403 CCTCCACGGAGTCGGAGTACGAGATGCAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTG 1776344 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| ||||| |||||||| |||| | ||| ||||| | ||| Sbjct 1776343 AGCGTGCGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCGGGAGGA 1776284 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| |||||| ||| | | | ||||| | |||||| Sbjct 1776283 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACGTTCTCGATCGTGTCCGAAGGCTCCACT 1776224 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 1776223 TCGAGCGTGATTGTTTTTCCAGTCAGTGTCTTCACGAAGATCTGCAT 1776177 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || ||||| |||||||| ||||| || ||||| Sbjct 1776632 GCCTCCGCGGAGGCGGAGCACCAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGA 1776573 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || | || ||||| || ||||||||||| ||||| |||||||| || | || Sbjct 1776572 GAGGGTTCGTCCTTCTTCGAGTTGTTTGCCGGCGAAGATCAGTCGCTGTTGATCAGGCGG 1776513 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| | || || | ||| | | |||||| | ||| | Sbjct 1776512 AATTCCTTCCTTGTCC-TGAATCTTGGCCTTGACGTTTTCGATGGTGTCGGAGGGCTCGA 1776454 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || ||||| || || ||||| || || ||||||||||| Sbjct 1776453 CCTCGAGGGTGATTGTTTTTCCGGTGAGCGTTTTCACAAAAATCTGCAT 1776405 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || ||||| | || ||||| || || |||||||||||| | ||||| |||||| Sbjct 1777540 CCTCGCAGACGAAGGACGAGATGAAGAGTCGATTCCTTCTGAATGCTGTAGTCCGAGAGG 1777481 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || ||||||||||| |||||||| || || || || || || | |||| | Sbjct 1777480 GTGCGGCCATCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGATCGGGCGGAATG 1777421 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTC 41817 | |||||||| | ||| | ||||| | ||| | | ||||| || || ||||| Sbjct 1777420 CCCTCCTTGT-CTTGAATCTTTGCCTTGACGTTCTCGATTGTGTCCGACGGTTCAACCTC 1777362 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||| || || |||||||| || ||||| |||||||| |||||| Sbjct 1777361 GAGCGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATTTGCATG 1777316 Score = 129 bits (142), Expect = 5e-25 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||||||| || ||| ||||| ||||| |||||| ||| ||||| Sbjct 1776066 AGACGGAGCACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTGAGCGTGCGA 1776007 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||| ||||| || ||||| |||| ||||||||||| | |||| || ||| Sbjct 1776006 CCGTCTTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCGGGAGGAATGCCCTCT 1775947 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCG 41822 |||||| || |||| | | | ||| | | |||||| | |||||| || | | Sbjct 1775946 TTGTCCTGGAGTTTTGGACCTTGACGTTTTCAATCGTGTCGGAGGCCTCCACGTCGAGGG 1775887 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| ||||| || ||||| |||||||||||||| Sbjct 1775886 TGAT-GGTTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1775848 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| |||| || |||||| || || || |||||||| Sbjct 1777316 GCCTCCTCGGAGACGGAGAACCAAGTGCAAGGTCGACTCCTTTTGGATATTGTAGTCGGA 1777257 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||| || || ||||| ||||| ||||| ||||||| || Sbjct 1777256 CAGCGTGCGACCGTCTTCGAGCTGTTTACCAGCGAAAATCAGACGCTGCTGGTCCGGTGG 1777197 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||| ||| ||| ||| || ||| ||||| | ||| Sbjct 1777196 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATC--GTGTCAGAGGGCTCG 1777139 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 1777138 ACCTCCAGAGTGATCGTCTTGCCCGTTAGGGTCTTGACGAAAATCTGCATG 1777088 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| ||||| || || |||||| || ||||| |||||| Sbjct 1777939 GCCTCCACGGAGTCGAAGCACGAGATGGAGTGTCGACTCCTTTTGGATGTTGTAGTCGCT 1777880 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||| || || ||||| || || ||||||||||| | || Sbjct 1777879 CAGAGTGCGACCGTCCTCCAGCTGTTTTCCAGCGAAAATGAGTCGCTGTTGGTCGGGCGG 1777820 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| || |||| |||| ||| | | |||||| || || | Sbjct 1777819 GATACCCTCCTTGTCC-TGGATTTTGGCTTTCACGTTCTCGATGGTGTCGGACGCTTCGA 1777761 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| |||||||| || || || ||||| ||||| || |||||| Sbjct 1777760 CCTCGAGCGTGATCGTTTTTCCAGTGAGAGTCTTCACGAAGATTTGCATG 1777711 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||| || || ||||| || ||| Sbjct 1778166 CCACCACGCAGACGAAGAACCAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGCTC 1778107 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || |||||||||||||| ||||| || || ||||| ||||| | |||| Sbjct 1778106 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGGTCTGGGGGA 1778047 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| ||| ||| | | | ||||| || ||| || Sbjct 1778046 ATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTCTCGATGGTGTCCGACGGCTCGACT 1777987 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || ||||| || || ||||||||| Sbjct 1777986 TCCAGGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATG 1777939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291223073200