Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq652 172 4e-38 seq9819 111 1e-19 >seq652 Length=419067 Score = 172 bits (190), Expect = 4e-38 Identities = 427/641 (67%), Gaps = 9/641 (1%) Strand=Plus/Plus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 |||| |||||| ||||| | ||| || | ||| || || || | || || ||| Sbjct 407060 TAGACGTGAGCGTCTCCCAAAGTGTGTACAAATTCACCGGGTTTCAAGCCGGTAACGTGA 407119 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || |||||| | || | | | || ||| |||||||| || || ||||| ||||| Sbjct 407120 GCGATCATGTAGGTGAGTAAGGCGTACGAAGCTATGTTAAACGGTACGCCTAAACCCATG 407179 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG-ACT 101880 || || ||||| || || ||||||| ||||| || || || |||||||| || || Sbjct 407180 TCGGCCGATCTCTGGTAAAGTTGACTTGAAAGTTTACCGTCGGCCACATAAAACTGGACC 407239 Query 101881 TAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACA 101939 | ||| || || || || | |||||||||| | ||| | |||||||| |||| Sbjct 407240 --AGACAGTGGCAGGGAGGTAGAGCCATTTTAGGCAGATCTAACGGGTTCCAAGCGCACA 407297 Query 101940 TTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGT 101999 ||| || ||||| || | || || ||||| || | || ||||| | | || |||| Sbjct 407298 TTATCAATCTTCTGTCGTTCGGTTTGGTTTTGATGGATTCGATCAAATTGGTCAACTGGT 407357 Query 102000 CAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCC 102059 | || || | ||| | |||||| | | || ||||| || |||||||| |||| Sbjct 407358 CGACACCCTTACCTCTGTAATCGTAGTTCATATCTACGTATTCGGCGCCGAAATGTCTCC 407417 Query 102060 ACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA-TAAAAACCAAGTTTA 102118 | || || || ||||||||||| | ||| ||||| || |||| | | | ||||| Sbjct 407418 ATTGGAAACCGTACACAGGTCCCAAATCGCCTTCTTCCCTGTGAGTCAGTCCCAAG-GAG 407476 Query 102119 TCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCT 102178 || | | || || | || | ||| |||| |||||| | | | |||| Sbjct 407477 TCGAGGTACTCCCTCGAACTGTTACCCGACCAGATGTTCACGCCGTTTTTAGCCAACTCT 407536 Query 102179 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAAT 102238 || | || || ||| |||||||||| | | |||||| || ||||| | |||||| Sbjct 407537 TTCTCGCTTGTCGAACCTTTGATAAACCAAAGTAATTCTTCTACGACACCGCGCCAAAAC 407596 Query 102239 ACTCTCTTAGTAGTTAAAAGTGGAAATTCA---TTTTCTAAACTAAACCTAGACTGTGTT 102295 || ||||||||||| || | || || ||| ||||| ||||| |||| | ||| | Sbjct 407597 ACCCTCTTAGTAGTCAATAAAGGGAACTCACCGTTTTCCAAACTCCACCTGGTCTGAGCG 407656 Query 102296 CCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCATTTTT 102336 || || ||| ||| ||||| || || ||||| | ||| Sbjct 407657 CCGAATATAGACAGGGTTCCCACACCGGTCCTGTCTTCTTT 407697 >seq9819 Length=195331 Score = 111 bits (122), Expect = 1e-19 Identities = 392/602 (65%), Gaps = 48/602 (8%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| || ||| ||||| | | ||| || || |||||||| || ||||| || Sbjct 12286 GACATGAGCTATTATGTGTGTTAATAATGCATAACTTGCTATGTTAAAAGGTACTCCCAA 12227 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAA----GCTTT--CCAT------- 101861 ||||||||| || ||||||||| | | ||||| || | |||| |||| Sbjct 12226 CCCCATATCTGCAGATCTTTGAAATAAATGACAAGACAATTCTCTTTTACCATTTATTTT 12167 Query 101862 --CACAGACATAAAATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGT 101918 ||| |||| ||| || | |||| ||||||||| || | ||||||||| | | | Sbjct 12166 TGCACTTACATCAAAATGTGCT-ATACAATGACAAGGAGGAAGTGCCATTTTAGAATTAT 12108 Query 101919 CTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTAT 101978 | |||||||| | | || ||| |||||||| ||| || ||| || || Sbjct 12107 CCTTTGGGTTCCAAGCTAATAATATCATTCTTCTATCCAAAGGTTTATTTTGAATTGTTG 12048 Query 101979 CAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTAT 102038 ||| | | ||||| ||| || | || | ||||| ||||| ||||| ||| Sbjct 12047 TAATAATATTTTTTAGTTGATCTATACCACCATATTTATTATCGCACCCAA------TAT 11994 Query 102039 ATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTC 102098 | ||| | || |||| ||||||||||| ||||| | |||||| | | |||| | Sbjct 11993 AATCTTCACCATAATGTCTCCACTGAAAACCATAAATAGGTCCTAAA------TCATTTT 11940 Query 102099 TGTCATAAAAACCAAGT-TTATCTA-AAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 | | |||||| | || | || |||| ||| | |||| || |||||| | Sbjct 11939 TTT--TAAAAAGTTTTTGTTGTGTATAAAACGAT---TCTGCATTTTTATTCCAAATTTT 11885 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTG-----TCAGTAGATCCTCTGATAAACCACAAC 102211 || || | |||| | | | | || ||| || || |||||||| || Sbjct 11884 AACTCC--TTTTTGAT---TTAATACAGAAACATCTGTACTCCCGCTAATAAACCATAAG 11830 Query 102212 AGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTT 102271 |||||||| ||||| ||| ||||||| ||| | || ||||||| | ||||| || | Sbjct 11829 AGTTCTTCTACAACTCCTTTCCAAAAAACTTTTTTTGTAGTTAGTAACGGAAA-AGATGT 11771 Query 102272 TC-TAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTC 102330 || |||| |||| | | ||| ||||| | | | |||||| | |||||||| || Sbjct 11770 TCTTAAATTAAATTTTAATTGTTCACCAAATACATTTTTAGTTCCAATTCCTGTTCTATC 11711 Query 102331 AT 102332 || Sbjct 11710 AT 11709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361162004708009