Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq297 98.7 9e-16 >seq297 Length=1033366 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || |||||||| |||||| ||| |||||| || Sbjct 233375 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233434 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||||||| | ||| |||||| Sbjct 233435 GATACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 233494 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||| | |||||||| || |||||||| |||||| || | ||| | | || |||| Sbjct 233495 CAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTT--CTGACTACA 233552 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 |||| ||||||||||| ||||| || Sbjct 233553 ATATCCAGAAGGAATCCACTCTCCA 233577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || |||||||| |||||| ||| |||||| || Sbjct 234059 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 234118 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| |||||| || || ||||| | ||| |||||| Sbjct 234119 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 234178 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || ||||||||| | || || | || |||||| Sbjct 234179 CAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAAT 234238 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || ||||||||||| ||||| || Sbjct 234239 ATCCAGAAGGAATCCACTCTCCA 234261 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || ||||| |||||| ||| ||||| || Sbjct 233603 ATGCAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCA 233662 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| ||||| || ||||||||| | ||| ||||| Sbjct 233663 GATACCATTGAAAACGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCAG 233722 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || || ||||| || |||||| | |||| | | || ||||| Sbjct 233723 CAGAGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAAC 233782 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||||||||| ||||| || |||| || || Sbjct 233783 ATCCAGAAGGAATCAACTCTCCATCTGGTCTTGCG 233817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428230241030645