Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001824.1 Length=102653 Score E Sequences producing significant alignments: (Bits) Value seq9819 93.3 3e-14 >seq9819 Length=195331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 71806 AATAACAGGAGAAGCTGTAGTATAATTAGA---TTGAACAGCTGCATGAGTTGTATTTCT 71862 ||||||||||||||| || ||||| || || |||| || | | ||||||||||| Sbjct 32510 AATAACAGGAGAAGCGGTTGTATAGTTTGAAGGTTGATTAGAA--AAG-GTTGTATTTCT 32566 Query 71863 TACACCAAAAAATAACAATTTAATAGCGTGTGAAAACCGAATATCAAAATTAGG-GCTTG 71921 ||| |||| || | ||||||||| || || || |||||||| | ||||| || | Sbjct 32567 AACAGCAAAGAAAAGTGCTTTAATAGCATGAGAGAAGCGAATATCGTAGTTAGGAGCAT- 32625 Query 71922 GAATAGTTAACGGTTGAAATACATGTTTTGGCGCAGTTTGAACTTGTTCCACTAATATAT 71981 | |||||| || | | ||||| ||| ||||| ||||||||||| || || |||| Sbjct 32626 CATTAGTTATTGGATTCCAAACATGACGTGGAGCAGTCTGAACTTGTTCAACCAAAATAT 32685 Query 71982 CTCGAGGAGTTGTACCCATAAGTCGCCGTTCTTCATT 72018 ||| || |||||| ||| || |||||||| Sbjct 32686 CTCTTACAGAGCATCCCATACGTCTTCGCTCTTCATT 32722 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 64621 ATATGTAGGTGCTTATGTTGTTGAACCAGTACCTGGTCTGTATGAAAATGTTGTACCGTT 64680 |||| |||||| | ||| |||| ||||| || || | | ||||||||| || || Sbjct 119233 ATATAGAGGTGCCGAAGTTTTTGATCCAGTGCCAGGATTAAAAAGAAATGTTGTTCCTTT 119174 Query 64681 AGATTTTTCAAGTCTATATCCAAGTATTATTATTGCAAAAAACATTTGTTATTCTACATT 64740 ||||||| || || || |||||| | |||||||||| |||||| ||||||||||| || Sbjct 119173 AGATTTTGCATCACTTTACCCAAGTTTAATTATTGCAAGAAACATGTGTTATTCTACTTT 119114 Query 64741 T 64741 | Sbjct 119113 T 119113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328283724575986