Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1037 107 2e-18 seq297 86.0 5e-12 >seq1037 Length=250510 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||||||| || | ||| | || || |||||||||||||| ||||| | | Sbjct 81542 CCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 81483 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || || | |||||| || ||| | || | |||||||| || || Sbjct 81482 AAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81423 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | || ||| |||||| | Sbjct 81422 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACT 81363 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | ||||| ||||| |||||||| Sbjct 81362 TCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| |||||||| || | ||| | ||| || |||||||||||||| ||||||| | Sbjct 80652 CCTCCTCTTAGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 80593 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || || | ||||||||| ||| | || | |||||||| || || Sbjct 80592 AAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGG 80533 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||| || |||||| Sbjct 80532 ATACCTTCCTTATCCTGGATCTT 80510 >seq297 Length=1033366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| | || ||||||||||||||||| ||||| | || || | | || || Sbjct 233355 ACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCT 233296 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 || ||||| || ||| | || | ||||||||| || ||| | ||||| ||||| | Sbjct 233295 AGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 233236 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || ||| || | | | ||||| ||||| || | |||||||||||| Sbjct 233235 ATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACCTCAAGAGTAATGGTCTTG 233176 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || | || |||||||| || |||||| Sbjct 233175 CCTGTGAGGGTCTTGACAAAGATCTGCATT 233146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422154941432444