Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1037 86.0 5e-12 seq297 82.4 6e-11 >seq1037 Length=250510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || |||||| ||||| | |||||||| ||||||||||| ||| Sbjct 80747 GATAAGGAAGGTATCCCTCCAGATCAGCAAAGGTTGATCTTTGCCGGCAAACAATTAGAA 80806 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 || | ||| || | || |||||||| ||||| |||||||| ||||| Sbjct 80807 GACGGCCGCACTTTGTCAGACTACAATATCCAAAAAGAATCTACCCTTCA 80856 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || || || || ||| ||| ||| | || Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || ||||| |||||| | || |||||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| |||||||| || |||||| || || | || ||||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||||||||||| Sbjct 80606 ATTCAAAAGGAATCTACTCTTCA 80628 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| |||| ||||| ||||| ||| ||| || ||| | Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||| || || ||||| |||||| | || |||||| Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || ||||| || |||||| || || | || ||||| Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAGACTACAAC 81495 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||||| ||||| Sbjct 81496 ATTCAAAAGGAATCTACCCTTCA 81518 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || || || ||||| ||| ||| ||| | || Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || ||||| |||||| | || |||||| Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || ||||| |||||||| || |||||| || || | || ||||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||||||||||| Sbjct 83985 ATTCAAAAGGAATCTACTCTTCA 84007 >seq297 Length=1033366 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || |||| || | || ||||| |||||||| || || || | Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGAGCCATC 233205 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || |||| ||||| || ||||||||| | ||| |||||| Sbjct 233206 AGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 233265 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 || ||| | |||||||| || |||||| | |||||| || | ||| | | || ||| Sbjct 233266 GCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTT--CTGACTAC 233323 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||| ||||| || || |||| || || Sbjct 233324 AACATTCAAAAGGAGTCTACCCTCCATCTGGTCTTGCG 233361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410695371574226