Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2633 134 1e-26 seq297 113 5e-20 seq223 105 7e-18 seq1037 89.7 5e-13 >seq2633 Length=69334 Score = 134 bits (148), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| ||||| | ||||| || ||||| || ||||| || |||| Sbjct 13273 TTCAATGCCATTGAGACTCTAGATTGCGTTAAGCGCAAGGCAGATTGGGCTCTAGACTGG 13214 Query 117008 ATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 |||| | || || | || | ||||| || | | || || || || || || ||||| Sbjct 13213 ATCGGCAGC-GATACAGCTACTTTCGGTGAAAGGGTCGTCGCATTTGCTGCTGTTGAGGG 13155 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||||||||| || |||||||| || || |||||||||||||| || || ||||| Sbjct 13154 TATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCTGGCTCAAGAAACGAGGTCTTATGCC 13095 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| ||||||||||||||||||| || || |||||||||| Sbjct 13094 CGGTTTGACTTTCAGCAACGAGCTTATTTCAAGGGACGAGG 13054 >seq297 Length=1033366 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| ||||| ||||| |||||||| | || ||||| || | Sbjct 232691 ATGCAGATCTTCGTAAAAACCCTCACAGGCAAGACCATCACTCTTGAGGTCGAGCCCTCA 232750 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || | || || | ||||| || || || ||| | || ||| Sbjct 232751 GACACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 232810 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || || ||||| || | ||||| || ||||||||| Sbjct 232811 CAGAGGTTGATCTTTGCAGGAAAGCAACTGGAAGATGGTCGCACACTTTCTGACTACAAC 232870 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||||| || ||||| Sbjct 232871 ATCCAGAAGGAGTCAACCCTCCATCTTGTCTTGCG 232905 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || || || ||||||||||| ||| | || || ||| || | Sbjct 234514 AATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTC 234573 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || ||||| |||||| ||||| | ||||| ||||| || ||| | || | Sbjct 234574 AGATACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATC 234632 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| ||| |||||||| || || || | || ||||| || || | Sbjct 234633 AGCAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGATGGACGTACCCTATCTGATTATA 234692 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||| || || |||| |||||||| || Sbjct 234693 ACATCCAAAAAGAATCCACTCTGCATCTTGT 234723 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||| || ||| | || || ||| || | Sbjct 234059 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 234118 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||||| ||||| || ||||| ||| | || || Sbjct 234119 GACACCATTGAAAACG-TCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCA 234177 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || |||||||| || | | || || |||||||| Sbjct 234178 GCAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAA 234237 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || ||||| || Sbjct 234238 TATCCAGAAGGAATCCACTCTCCATCTTGT 234267 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||||||||| | || || || || || || |||| || | ||||| | Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTG-AGCCATC 234345 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| |||| | ||||| | |||||||| || || ||| | || || Sbjct 234346 TGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 234405 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || |||||||| || || |||| ||||| || |||||||| Sbjct 234406 GCAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTACAA 234465 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || ||||| Sbjct 234466 CATCCAGAAGGAATCCACTCTCCATCTGGTCTTGCG 234501 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||| || ||| | || || ||| | | Sbjct 233603 ATGCAGATCTTCGTTAAGACCCTCACTGGTAAAACTATTACCTTGGAAGTTGAACCTTCA 233662 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | |||| ||||| | |||||||| || || ||| | || || Sbjct 233663 GATACCATTGAAAACGTT-AAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGATCA 233721 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| || |||||||| || || | | || || |||||||| Sbjct 233722 GCAGAGGTTGATCTTCGCTGGTAAACAGCTAGAAGATGGAAGAACTCTTTCGGACTACAA 233781 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||||| || ||||| Sbjct 233782 CATCCAGAAGGAATCAACTCTCCATCTGGTCTTGCG 233817 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| | || || || ||||| || |||| |||||| | | Sbjct 232919 ATGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA 232978 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | ||||| | ||||| || ||||| ||| | || ||| Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || || |||||||| || | || || || ||||||||| Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 233098 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 233099 ATCCAGAAGGAATCTACTCTCCATCTTGT 233127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||| || ||| | || || ||| || | Sbjct 233375 ATGCAGATCTTCGTTAAGACTCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233434 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | ||||| | |||||||| || || ||| | || ||| Sbjct 233435 GATACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 233494 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||| || || || | ||||| || |||||||| Sbjct 233495 CAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACAAT 233554 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || ||||| || Sbjct 233555 ATCCAGAAGGAATCCACTCTCCATCTTGT 233583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| ||||| ||||| || | || || || |||| Sbjct 233146 AATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACTCTTGAGGTTGA-GCCAT 233204 Query 40749 C-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || | | | ||| |||| | ||||| | |||||||| || || ||| | || | Sbjct 233205 CAGATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATC 233264 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || ||||| || || || | ||||| || ||||||| Sbjct 233265 AGCAGAGATTAATCTTTGCCGGAAAACAACTAGAAGATGGTCGCACACTTTCTGACTACA 233324 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || |||||| | || || ||||| || ||||| Sbjct 233325 ACATTCAAAAGGAGTCTACCCTCCATCTGGTCTTGCG 233361 >seq223 Length=534358 Score = 105 bits (116), Expect = 7e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || |||||||| |||| ||||| | Sbjct 233143 AAGATGCAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCT 233202 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | | |||| || || | ||||| |||||||| || | || Sbjct 233203 TCAGATACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCTGAT 233262 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||||||||| || || | || || ||| ||||||| Sbjct 233263 CAGCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACACTCTCCGACTAC 233322 Query 40867 AACATCCAGAAGG 40879 ||||| ||||||| Sbjct 233323 AACATTCAGAAGG 233335 >seq1037 Length=250510 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| || || || || || |||||| | || || ||||| | Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || || ||||| | || ||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||||||| | || || | |||||| | ||||||||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| | || || ||||| || Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGT 80634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| || || || || ||||||||| | || || ||||| | Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || || || || | || ||| Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | || ||||||||| | || || | |||||| | ||||||||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || ||||| | || || ||||| || Sbjct 83985 ATTCAAAAGGAATCTACTCTTCATCTTGT 84013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515088727177840