Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq223 109 5e-19 seq297 102 7e-17 seq1037 91.5 1e-13 >seq223 Length=534358 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| | || || ||| || |||||||| |||||| |||| Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 |||||||||||||| ||||| ||||||||||||||| || || || || | ||| Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||| || | ||||||||||| || | || || || || || || || || || Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 233153 ATCTGCAT 233146 >seq297 Length=1033366 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||| |||| |||||||| |||||||||||||| || Sbjct 233375 TACCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 233316 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || || |||||||| || |||| | | ||||||||| || | Sbjct 233315 AAAGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGG 233256 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| ||| || | ||| | ||| || | ||| | Sbjct 233255 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAA 233196 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || || || ||||| |||||||| Sbjct 233195 CCTCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || |||||||| ||||| ||||| |||| | ||| ||| || || ||||||| Sbjct 234027 GTGGATTCTTTTTGGATGTTATAATCAG--ATAGGGTACGTCCATCTTCTAGTTGTTTTC 233970 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | ||| |||| | | ||||||||| ||||| || || || |||||| ||||| | Sbjct 233969 CTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCT 233910 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | |||||| | | || || || | ||| | ||||||||||| |||| Sbjct 233909 TGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAG 233850 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 233849 TCTTAACGAAGATCTGCAT 233831 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || |||||||| ||||| ||||| |||| | ||| ||| || || ||||| | Sbjct 234711 GTGGATTCTTTTTGGATGTTATAATCAG--ATAGGGTACGTCCATCTTCTAGTTGTTTGC 234654 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | ||| |||| | | ||||||||| || || || |||||||||||| ||||| | Sbjct 234653 CTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTAGCCT 234594 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | ||| || | | || || || | ||| | ||||||||||| || | Sbjct 234593 TGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGTAAGGG 234534 Query 118720 TTTTTACAAAAATCTGCAT 118738 | |||||||| |||||||| Sbjct 234533 TCTTTACAAAGATCTGCAT 234515 >seq1037 Length=250510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATA--GTGCGCGTATCCTCGAGCTGTTTTC 118599 ||||| |||||||| |||||||| || | ||| || || || || | ||||| | Sbjct 84457 GTAGATTCTTTTTGGATGTTGTAGTC--TGATAAGGTACGGCCGTCTTCCAATTGTTTAC 84400 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | | ||||||||| ||||| || || ||||| || || || | Sbjct 84399 CAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCT 84340 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 |||| | |||| ||||| | |||| || || || | ||| | || |||||||||||| Sbjct 84339 TAACATTCTCGATTGTGTCTGATGCT-TCTACTTCAAGGGTGATGGTCTTGCCGGTCAGA 84281 Query 118719 GTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| Sbjct 84280 GTTTTAACAAAGATTTGCAT 84261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||||||||| || || || || ||| || | |||||| || Sbjct 81512 GTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGTTTACCG 81453 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| ||||| || || ||||| || || || ||| Sbjct 81452 GCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 81393 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | | ||| | | ||| || || | ||| | || ||||||||||| ||| Sbjct 81392 ACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAGTGTT 81333 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 81332 TTAACAAAGATTTGCAT 81316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||||||||| || || ||||| ||| || | |||||| || Sbjct 80622 GTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCG 80563 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| ||||| || || ||||| || || || ||| Sbjct 80562 GCAAAGATTAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTAGCCTTA 80503 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | |||||| | |||| || || || | ||| | || || || || || || Sbjct 80502 ACATTCTCAATGGTGTCTGATGCT-TCAACTTCAAGGGTGATAGTCTTACCAGTAAGGGT 80444 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||| || || ||||| Sbjct 80443 TTTTACGAAGATTTGCAT 80426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||||||||| || || ||||| ||| || | |||||| ||| Sbjct 84001 GTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGTTTGCCA 83942 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||||||||| ||||| || || ||||| || || || ||| Sbjct 83941 GCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTA 83882 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | |||||| | |||| || || || | ||| | || || || || || || Sbjct 83881 ACATTCTCAATGGTGTCTGATGCT-TCTACTTCAAGGGTGATGGTCTTACCAGTAAGGGT 83823 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||| || || ||||| Sbjct 83822 TTTTACGAAGATTTGCAT 83805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433723284427228