Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15559 114 1e-20 seq4283 113 5e-20 seq3476 113 5e-20 seq2998 113 5e-20 seq1676 113 5e-20 seq1173 111 2e-19 seq763 109 6e-19 seq5233 107 2e-18 seq1413 107 2e-18 seq3305 104 3e-17 seq19427 95.1 1e-14 seq134 89.7 6e-13 >seq15559 Length=2691 Score = 114 bits (126), Expect = 1e-20 Identities = 85/98 (87%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 60052 TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 653 TTAT-AAAAACAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 595 Query 60112 CATACTCACCACTATACTACCGAGGATTGAATATATAA 60149 ||||| |||||||||||||||||||||| | ||||| Sbjct 594 GATACTTACCACTATACTACCGAGGATTGTAGTTATAA 557 >seq4283 Length=18712 Score = 113 bits (124), Expect = 5e-20 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||| || ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 2365 ATAAAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2306 Query 60114 TACTCACCACTATACTACCGAGGATTG 60140 |||| |||||||||||||||||||||| Sbjct 2305 TACTTACCACTATACTACCGAGGATTG 2279 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1571 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1512 Query 60125 ATACTACCGAGGATTG 60140 |||||||||||||||| Sbjct 1511 ATACTACCGAGGATTG 1496 >seq3476 Length=38855 Score = 113 bits (124), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 28535 AAAAATATTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 28476 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| |||||||||||||||||||||| Sbjct 28475 ACTTACCACTATACTACCGAGGATTG 28450 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 14139 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 14080 Query 60125 ATACTACCGAGGATTG 60140 |||||||||||||||| Sbjct 14079 ATACTACCGAGGATTG 14064 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13863 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 13804 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 13803 TACTACCGAGGACTG 13789 >seq2998 Length=51632 Score = 113 bits (124), Expect = 5e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 493 ATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTAC 434 Query 60121 CACTATACTACCGAGGATTG 60140 |||||||||||||||||||| Sbjct 433 CACTATACTACCGAGGATTG 414 Score = 107 bits (118), Expect = 2e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 239 AAAGATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 180 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||| ||||||||| Sbjct 179 TTACCACTATACTA-CGAGGATTG 157 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 51062 AAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 51121 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 51122 TTACCACTATACTACCGAGGAATG 51145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| |||| ||||||||||||| ||||| |||||||||||| || ||||| | |||||| Sbjct 2312 TCCCCGGCGGGGAATCGAACCCCGGTCTTTCGCGTGACAGGCAGAGATACTTATCACTAT 2253 Query 60127 ACTACCGAGGATTG 60140 |||||||||||||| Sbjct 2252 ACTACCGAGGATTG 2239 >seq1676 Length=294097 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 105394 AAAAATTTAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 105335 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||||||||||| Sbjct 105334 ACTTACCACTATACTACCGAGGAT 105311 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 106119 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 106060 Query 60126 TACTACCGAGGATTGAATATATAACTTG 60153 |||||||||||||| |||| ||| ||| Sbjct 106059 TACTACCGAGGATT--ATATTTAAATTG 106034 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 26526 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 26467 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 26466 ATACTACCGAGGA 26454 >seq1173 Length=322340 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 177655 AAAAATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 177596 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 177595 TTACCACTATACTACCGAGGACTG 177572 >seq763 Length=291549 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 218449 AAAAGTAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 218508 Query 60117 TCACCACTATACTACCGAGGATT 60139 | ||||||||||||||||||||| Sbjct 218509 TTACCACTATACTACCGAGGATT 218531 >seq5233 Length=10205 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2354 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2413 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 2414 TACTACCGAGGATT 2427 >seq1413 Length=333260 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 26180 AAAAAGAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 26121 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 26120 TTACCACTATACTACCGAGGACTG 26097 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 26451 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 26392 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 26391 TACTACCGAGGACTG 26377 Score = 100 bits (110), Expect = 3e-16 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 60054 ATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 ||| ||||| || |||| |||| ||||||||||||| ||||||| ||||||||||||| Sbjct 28754 ATGTAAAATGTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGG 28696 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 28695 GATACTTACCACTATACTACCGAGGA 28670 >seq3305 Length=33394 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 16580 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 16521 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 16520 TACTACCGAGGA 16509 >seq19427 Length=2087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 256 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAG 197 Query 60136 GA 60137 || Sbjct 196 GA 195 >seq134 Length=1483554 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||| | |||| || | |||||| ||||| |||||||||||||| |||||| ||||| | Sbjct 1431525 AATATGCTCCCCGACGGGGAATTAAACCCCGGTCTCCCGCGTGATAGGCGGGGATACTTA 1431584 Query 60120 CCACTATACTACCGAGGAT 60138 ||||||||||||||||||| Sbjct 1431585 CCACTATACTACCGAGGAT 1431603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571672794340520