Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9819 194 2e-44 seq1037 105 1e-17 seq297 95.1 2e-14 seq2721 84.2 3e-11 >seq9819 Length=195331 Score = 194 bits (214), Expect = 2e-44 Identities = 336/478 (70%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 25888 TTTTTATAAATATAATTAAAA--ATT-ATATAAAATG---TCTTTAATTGATGTGTGTTA 25941 ||||||| | | || ||||| ||| ||| | |||| ||||||| | | |||||||| Sbjct 107725 TTTTTATTTAAAGAAGTAAAATTATTGATAAATAATGGATTCTTTAAATAAAGTGTGTTA 107666 Query 25942 TGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGTTATAGA 26001 |||||| || ||||| | | |||| | || | ||||| |||||| ||| || | || Sbjct 107665 TGAACAGATAAAAGATACCTTTTATAAGGGATTGTTTGGAGATTTTCCGTTAATTGTTGA 107606 Query 26002 TAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAAATTTAA 26061 ||||| ||| || | ||| ||||||||||| ||||| ||||||||||| ||||||| | Sbjct 107605 TAAAA-AACGGGCTATTTCAATGCTACTAAATTATGCAATTTAGGTGGAAAAAAATACTA 107547 Query 26062 ACAATGGAAACGTTTAGAAAAATCACAAGAATTAATAGATTA-TATTAAAAATAACCGAG 26120 || ||||||| ||| ||| || ||||||| | || ||| ||| ||| | Sbjct 107546 TCATTGGAAACAAACAGAGCGTTCAAAAAAATTAATTCAATATTATGAAACCCGACCACG 107487 Query 26121 GT----GGGGATCCCCACCCCGGCTTTTATGAAACAAAAGGAGATAATAAAGATGAAAAT 26176 | | | | | ||| |||||||||| |||||||||||| ||||| | Sbjct 107486 TTAATACGTGGT--CGGCCCATTGTTTTATGAAATTAAAGGAGATAAT---GATGATGTT 107432 Query 26177 GTTaaaaaaaTAACTGGTTGTTATGTACCCAAAGAAGTCATTTTAGATATATCGTCTTGG 26236 |||| ||||||||||| ||||| |||||| | ||| | || || | |||||| Sbjct 107431 ACTAAACAAATAACTGGTCAATATGTTATAAAAGAATTTATTCTTGACATTGCTTCTTGG 107372 Query 26237 ATATCTGTAGAATTTTATTTAAAATGTAATGACATAATTATAAATTATTATAATACTGAA 26296 || || ||||||||||| |||||||| | |||||||||||||||| || |||| Sbjct 107371 ATTTCAGTAGAATTTTACGATAAATGTAACAATATAATTATAAATTATTTCGTTAATGAA 107312 Query 26297 TTTAAATCTTTGTCTgaaaaagaaattattaa-taaaattaaagaaatagaaaataaa 26353 | |||| | || | ||||| | ||| || ||||||||| ||| | ||| | ||| Sbjct 107311 TATAAAACAATGGAT-AAAAAAACTTTACAAAGTAAAATTAATGAAGTTGAAGAAAAA 107255 Score = 170 bits (188), Expect = 3e-37 Identities = 263/370 (71%), Gaps = 13/370 (4%) Strand=Plus/Minus Query 96455 TCTTTAATTGATGTATGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGT 96514 ||||||| | | || ||||||||||| || ||||| | | |||| | || || ||||| Sbjct 107685 TCTTTAAATAAAGTGTGTTATGAACAGATAAAAGATACCTTTTATAAGGGATTGTTTGGA 107626 Query 96515 GATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGTAAT 96574 |||||| ||| || | ||||||| || || | ||| ||||||||||||||||| ||| Sbjct 107625 GATTTTCCGTTAATTGTTGATAAAAA-ACGGGCTATTTCAATGCTACTAAATTATGCAAT 107567 Query 96575 TTATCAGGAAAAAGATTTAGAAATTGGATTAGATTAGATAGATCTAAACAATTATTAAAA 96634 ||| ||||||| || |||||| | ||| | || ||| ||||| | || Sbjct 107566 TTAGGTGGAAAAAAATACTATCATTGGAAACAAACAGAGCGTTCAAAAAAATTAATTCAA 107507 Query 96635 TAT-ATGGAGAATTACCGAAGCTCATATGTGAGCG-----TTGGATTTTATGAAGTTAAA 96688 ||| ||| | ||| | | | ||| ||| || ||| ||||||||| ||||| Sbjct 107506 TATTATGAAACCCGACC-ACGTTAATACGTGGTCGGCCCATTG--TTTTATGAAATTAAA 107450 Query 96689 GGTGATAATAATAACAAAACATCTAAAGAAATTACAGGTCAATATGTACCTAAAGAAGTT 96748 || |||||| || | || |||| |||| || ||||||||||| |||||| || Sbjct 107449 GGAGATAATGATGATGTTAC---TAAACAAATAACTGGTCAATATGTTATAAAAGAATTT 107393 Query 96749 ATTTTAGATATATCATCGTGGATATCTGTAGAATTTTATTTAAAATGTAATGATATAATT 96808 ||| | || || | || ||||| || ||||||||||| |||||||| |||||||| Sbjct 107392 ATTCTTGACATTGCTTCTTGGATTTCAGTAGAATTTTACGATAAATGTAACAATATAATT 107333 Query 96809 ATAAATTATT 96818 |||||||||| Sbjct 107332 ATAAATTATT 107323 Score = 116 bits (128), Expect = 6e-21 Identities = 285/423 (67%), Gaps = 16/423 (4%) Strand=Plus/Minus Query 95301 ATTTTtataaataaaattaaanatatataaa--atgtcacttaataatatatGTTATGAA 95358 |||| | || |||||||| ||| |||| || || | ||||| | ||||||||| Sbjct 107720 ATTTAAAGAAGTAAAATTATTGATAAATAATGGAT-TCTTTAAATAAAGTGTGTTATGAA 107662 Query 95359 CACATTAAAGACTCATATTATTATGGTCTATTTGGTGATTTTAAATTAGTTATAGATAAA 95418 || || ||||| | | |||| | || | ||||| |||||| ||| || | |||||| Sbjct 107661 CAGATAAAAGATACCTTTTATAAGGGATTGTTTGGAGATTTTCCGTTAATTGTTGATAAA 107602 Query 95419 ACTACAGGTTGTTTTAATGCTACTAAATTATGTAATTTAGGTGGTAAACAATATAGAGAT 95478 | || || | ||| ||||||||||||||||| ||||||||||| ||| |||| || Sbjct 107601 AA-ACGGGCTATTTCAATGCTACTAAATTATGCAATTTAGGTGGAAAAAAATACTATCAT 107543 Query 95479 TGGAAACGTTTAGAAAAATCTAAAGAACTTATAAAAACATTAATAAATGTCAGA-CGCGA 95537 ||||||| ||| || ||| || ||| || |||| ||| | || | || Sbjct 107542 TGGAAACAAACAGAGCGTTC-AAAAAAATTAATTCAATATTATGAAA--CCCGACCACGT 107486 Query 95538 GAATTC-----CCGCGTCTGGGaatataatataataagtaataataatcacgaaatacat 95592 ||| | | || | | ||| | || | | | ||||| || | | ||| | Sbjct 107485 TAATACGTGGTCGGCCCATTGTTTTATGAAATTAAAGGAGATAATGATGATG--TTAC-T 107429 Query 95593 aaacaatataCTGGATATTATGTATCAAAAGATCTAATATTAGATATTGCATCTTGGATA 95652 |||||| ||||| | ||||| |||||| | || | || ||||| |||||||| Sbjct 107428 AAACAAATAACTGGTCAATATGTTATAAAAGAATTTATTCTTGACATTGCTTCTTGGATT 107369 Query 95653 GCTCCTGaattttatttaaaatgtaatgatataattataaattattataataatgaattt 95712 | |||||||| |||||||| |||||||||||||||||| |||||||| | Sbjct 107368 TCAGTAGAATTTTACGATAAATGTAACAATATAATTATAAATTATTTCGTTAATGAATAT 107309 Query 95713 aaa 95715 ||| Sbjct 107308 AAA 107306 >seq1037 Length=250510 Score = 105 bits (116), Expect = 1e-17 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || |||||||| | ||| | ||| | ||||||||| ||| || || || || || || Sbjct 84031 CCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCCGA 83973 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct 83972 CAAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGG 83913 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| ||||| || || ||||| |||||| Sbjct 83912 AATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTAC 83853 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || ||||| || ||||| || | ||||| | ||| |||||||| Sbjct 83852 TTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || | ||| | ||||||||||| ||||| || ||||| Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 80821 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || || ||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 80820 AAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGG 80761 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 80760 ATACCTTCCTTATCCTG 80744 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | ||| | || | || |||||||| || || || ||||| Sbjct 81314 CCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGAC 81255 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| ||||||||||| || ||||| ||||| || |||||||| ||||| Sbjct 81254 AAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81195 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 81194 ATACCTTCCTTATCCTG 81178 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || || | || | ||| | ||||||||||| ||||| || ||||| Sbjct 84259 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 84200 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| ||||| ||||| || ||||| ||||| || |||||||| || || Sbjct 84199 AAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 84140 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 84139 ATACCTTCCTTATCCTG 84123 >seq297 Length=1033366 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||| ||| | ||| ||||| || || || || || ||||||||||| | ||| Sbjct 233814 AAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCT 233755 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 |||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||| Sbjct 233754 TCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGAATACCTTCTTTGTCT 233695 Query 146186 TG 146187 || Sbjct 233694 TG 233693 >seq2721 Length=101127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||| || || || | || | || || ||||| |||||||||||||| Sbjct 40698 CCACCCCTAAGCCTCAACACAAGGTGAAGTGTGGACTCTTTCTGAATATTATAATCTGAT 40757 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||| || || ||||| |||||||| |||||||| |||||| Sbjct 40758 AAGGTGCGACCATCCTCAAGTTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGAGGA 40817 Query 146171 ATTCCT 146176 |||||| Sbjct 40818 ATTCCT 40823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743338111233280