Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq297 100 2e-16 seq223 93.3 3e-14 seq1037 87.8 1e-12 >seq297 Length=1033366 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || || || | |||| ||| ||||| ||||||||||| || Sbjct 233146 TCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 233087 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| |||||| |||||||| || | || |||||| || ||| Sbjct 233086 CAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGG 233027 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||| ||||| | || | || | ||| | | ||||| Sbjct 233026 AATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGA 232968 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || ||||| || || || | ||||| || ||||||||||| Sbjct 232967 CCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || || || || | ||| |||||| || ||||| || || Sbjct 234744 AAGCCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCA 234685 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 || || ||| | || || | || ||||||||||| || | || |||||| || | Sbjct 234684 GATAGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGG 234625 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||||||| || || ||| | | | || | ||| | | ||| Sbjct 234624 GGAATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCA 234565 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || |||||||||||||| || || || |||||||||||||| Sbjct 234564 ACTTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 >seq223 Length=534358 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || |||| | || || | ||| ||||| ||||| || Sbjct 233333 TTCTGAATGTTGTAGTCGGAGAGTGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATA 233274 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||| || || | || ||||||||| ||||| ||| | || | Sbjct 233273 AGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCG 233214 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| | | ||||| || | |||||||| || || || || || || || ||| Sbjct 233213 ATGGTATCTGAAGGCTCGACCTCGAGAGTGATGGTCTTACCCGTTAGGGTCTTAACGAAG 233154 Query 34382 ATCTGCATC 34390 ||||||||| Sbjct 233153 ATCTGCATC 233145 >seq1037 Length=250510 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| |||||| || ||||||||||| || | |||| |||| Sbjct 84472 AGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCT 84413 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 ||||| || || || || || || | || |||||| || || || || || ||||| | Sbjct 84412 TCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATAC-CT-TCCTTAT 84355 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | || | || | || | | ||| || || | ||||||| Sbjct 84354 CCTGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGG 84295 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||||||| |||||||| |||||||| ||||| Sbjct 84294 TCTTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| || || || || | ||| |||||| || || |||||||| ||| Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 80821 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 | ||| |||| || || || ||||| || || || | || ||||| || || || Sbjct 80820 AAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGG 80761 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 || || ||||| || ||||| ||||| || | || ||||| | | || | Sbjct 80760 ATAC-CT-TCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTA 80703 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || ||||| || || |||||||||||||| ||||| Sbjct 80702 CTTCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322992231403040