Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2633 109 5e-19 seq9819 91.5 1e-13 >seq2633 Length=69334 Score = 109 bits (120), Expect = 5e-19 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 ||||||||||||||||||| ||| | |||||||| || || | || ||||||||||| | Sbjct 18495 AATGTATGTATCAATAAGT-AGCGAGTACATTTCGGAATGGACATTCTCCATAGCTATTT 18553 Query 14532 GAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC-TGAGTAAAATCTTTCGG 14588 |||| ||||| ||||| || ||||| | ||| || ||||| ||| | || ||||| Sbjct 18554 GAAATCCATAGAAACACCTCGCTTCCGTAACC--TGAACCTCTTGACT-GAACCTTTCTA 18610 Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 | | ||||||||||| || ||||| ||| || || || || | | | || | Sbjct 18611 CAAGGTTTTCATTAACGATTCCATCCGAAGCAGCGAAGAAAGCGAGAACATGAGAGATGA 18670 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14699 ||| |||||||| | || || | |||||| || ||||||||| ||| Sbjct 18671 AGTGACGCTCTTCAGATTTCAGCTTCTCCCAATCAGCCAAATCCTTAAAAA 18721 >seq9819 Length=195331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 132200 AGATCCCAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGG 132259 |||||| ||||| |||||||| ||| || |||| ||||| | ||||| |||||||| Sbjct 71888 AGATCCTAAAAAAGCACATAATGGTACATTAAAATATACAAGCAGAGATAACCATAAAGG 71829 Query 132260 TGTATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTT 132319 ||| || || |||||||||| |||||| |||| ||| ||| ||| | |||| Sbjct 71828 TGT---TGAATCAAGAAGAGGAGATTTAGAAATTCTAGGCTATAATATGATAGAGTGGTC 71772 Query 132320 AGGTGGTAAATTGCCATGGGAA-AATGATTTAAAAA 132354 ||||||| || |||||| || | | || |||||| Sbjct 71771 TGGTGGTATTTTACCATGGCAACATTTATGTAAAAA 71736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482223452006120