Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1037 125 5e-24 seq297 82.4 6e-11 >seq1037 Length=250510 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || || || | ||||| || ||||| ||||||||||||||||| | | Sbjct 81542 CCTCCTCTCAGCCTGAGAACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGAC 81483 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| || ||||| || ||| |||| | || || ||||| || Sbjct 81482 AAGGTACGACCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81423 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | | ||| || |||| |||||| | Sbjct 81422 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACT 81363 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||||| |||||| ||||| |||||||| Sbjct 81362 TCAAGGGTGATGGTCTTGCCGGTCAGTGTTTTAACAAAGATTTGCAT 81316 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| ||||||||||| | ||||| || ||||| ||||||||||||||||| | | Sbjct 84031 CCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 83972 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| || |||||||| ||| | || | || || ||||| || Sbjct 83971 AAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGA 83912 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| ||||| | || | Sbjct 83911 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACT 83852 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || || || | |||||||| || |||||||| Sbjct 83851 TCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 83805 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| |||| ||||| | |||||| || ||||||||||| ||||||||||| | Sbjct 84487 CCTCCCCTGAGTCGGAGTACAAGGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGAT 84428 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||| || ||| |||| | || || ||||| || Sbjct 84427 AAGGTACGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGG 84368 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | | | ||||| | || | Sbjct 84367 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCGATTGTGTCTGATGCTTCTACT 84308 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||||| ||||| ||||| |||||||| Sbjct 84307 TCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTAACAAAGATTTGCAT 84261 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||| || ||||| | ||||| || ||||| ||||||||||||||||| | | Sbjct 80652 CCTCCTCTTAGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 80593 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| || |||||||| ||| |||| | || || ||||| || Sbjct 80592 AAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGG 80533 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| ||||| | || | Sbjct 80532 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACT 80473 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | || || || | |||||||| || |||||||| Sbjct 80472 TCAAGGGTGATAGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCAT 80426 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || || || | ||||| || ||||||||||| || |||||||| | | Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 80821 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| ||||||||||| ||| |||| | ||||| ||||| || Sbjct 80820 AAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGG 80761 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| | ||| |||||| | Sbjct 80760 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACT 80701 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | ||||| ||||| |||||||| Sbjct 80700 TCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || ||||| | |||||| |||||||||||||| ||||||||||| | | Sbjct 81314 CCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGAC 81255 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| |||||||| || ||| |||| | || || ||||| || Sbjct 81254 AAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81195 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | | | | ||||| |||||| Sbjct 81194 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACC 81135 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | ||| || | ||||| || | ||||| || || || ||||| |||| Sbjct 81134 TCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCATCTTTA 81083 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || || || | ||||| || ||||||||||| || |||||||| | | Sbjct 84259 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 84200 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || ||||| || ||| |||| | || || ||||| ||| Sbjct 84199 AAAGTGCGGCCATCTTCTAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 84140 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | ||| | |||| |||||| | Sbjct 84139 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTACT 84080 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | || |||||||| |||||||| Sbjct 84079 TCAAGGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATTTGCAT 84033 >seq297 Length=1033366 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| || || || ||||||||||| | | ||| || |||||||| ||| Sbjct 232893 TGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCATCTTCCAGTTGC 232834 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | || || ||||| ||| | |||||||| || || | | Sbjct 232833 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCT-T 232775 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||||| ||||||| |||| |||||| | ||||| || Sbjct 232774 GGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGT 232715 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | |||||||| || || ||||| Sbjct 232714 GAGGGTTTTTACGAAGATCTGCAT 232691 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | |||||| | || || || ||||| || || ||||||||||| | Sbjct 233146 TCCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 233087 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| || || || || |||| | || || ||||| ||| Sbjct 233086 CAGAGTACGTCCATCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGG 233027 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || |||| | || ||||| | | ||| || || || ||| Sbjct 233026 AATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACATTTTCAATGGTATCTGATGGTTCGA 232968 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| | || || |||||||||||||| || || ||||| Sbjct 232967 CCTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCAT 232919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||| | || || || ||||||||||| ||||| || || | Sbjct 234741 CCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGAT 234682 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||||||| || |||| | || || ||||| ||| Sbjct 234681 AGGGTACGTCCATCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGA 234622 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || |||| |||||| | | ||| || || ||| || | Sbjct 234621 ATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACT 234562 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||||||||| | || |||||||| || |||||| Sbjct 234561 TCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCATT 234514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379250337476955