Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq176 143 2e-29 seq1037 125 6e-24 seq297 111 1e-19 seq2633 107 2e-18 seq223 82.4 7e-11 >seq176 Length=640401 Score = 143 bits (158), Expect = 2e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 23294 AGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 || || || ||||| |||||||| ||||||||| || || ||||| || | | | Sbjct 536972 AGCCCAGGAGATTGATGTGGACACATAAGACTCCACTTTCCGTTCTTTTCCACTCTTTCC 537031 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || ||||| || ||||| | ||||| ||||| || || || ||||| || ||||| Sbjct 537032 ATGAATAGATCGGGAATCCACAAGGCGTAAAACAGATCTCGTGCCCGCACTTCTTCTTTA 537091 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 ||||||||||| ||||| || | ||| || || ||||| || ||||||||||| ||||| Sbjct 537092 CCGGTGTTCTTCTTCAAGTCAAGAAATTCAAATACGTCAGCGTGCCACGGCTCAAGGTAG 537151 Query 23474 ACGGCAAACGCGCCCGGTCTCT 23495 | ||| || || || ||||||| Sbjct 537152 ATGGCGAATGCACCAGGTCTCT 537173 >seq1037 Length=250510 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||| || || || || || || |||||| | || || ||| | || Sbjct 83805 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAAGTAGAAGCATCA 83864 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| |||||||| | || || || ||| Sbjct 83865 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 83924 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || |||||||||||||| ||||| | || || || || ||| Sbjct 83925 CAGAGGTTGATTTTTGCTGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 83984 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||||||||| ||||||||||| ||||| |||| Sbjct 83985 ATTCAAAAGGAATCTACTCTTCATCTTGTACTTAGACTTAGGGGAGGTA 84033 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||| || || || || || || |||||| | || |||||| | || Sbjct 80426 ATGCAAATCTTCGTAAAAACCCTTACTGGTAAGACTATCACCCTTGAAGTTGAAGCATCA 80485 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| |||||||| | || || || ||| Sbjct 80486 GACACCATTGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 80545 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || || ||||||||||| ||||| | || || || || ||| Sbjct 80546 CAGAGGTTAATCTTTGCCGGCAAACAGTTAGAAGATGGTCGCACCTTGTCGGACTACAAC 80605 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||||||||| ||||| || || || || |||| Sbjct 80606 ATTCAAAAGGAATCTACTCTTCATCTTGTACTCAGGCTAAGAGGAGGTA 80654 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| ||||| || |||||| | || || ||| | || Sbjct 84261 ATGCAAATCTTTGTTAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTAGAAGCATCA 84320 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| |||||||| | || || || ||| Sbjct 84321 GACACAATCGAGAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 84380 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 ||| | | || || ||||| ||||| ||||||||| || ||| || | || | Sbjct 84381 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGTACCTTATCAG--ACTACA 84438 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||| || ||||| || ||||| |||| ||||| |||| Sbjct 84439 ACATCCAAAAAGAATCTACCCTTCACCTTGTACTCCGACTCAGGGGAGGTA 84489 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || ||||| ||||| || |||||| | || || || || || Sbjct 81316 ATGCAAATCTTTGTTAAAACACTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCTCT 81375 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 81376 GACTCTATTGAAAATGTTAAGGCTAAGATCCAGGATAAGGAAGGTATCCCTCCAGATCAG 81435 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || |||||||| ||||| | || || || || ||| Sbjct 81436 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGTCGTACCTTGTCAGACTACAAC 81495 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || |||||||| || || || ||||| || |||| Sbjct 81496 ATTCAAAAGGAATCTACCCTTCATCTTGTTCTCAGGCTGAGAGGAGGTA 81544 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || ||||| || || ||| | || || || || Sbjct 81084 AAAGATGCAGATCTTCGTGAAAACCCTTACGGGCAAGACTATTACCTTAGAGGTAGAGCC 81143 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| || || | || ||| |||||||| | || || || Sbjct 81144 CTCAGACACCATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCAGA 81203 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | | || || || || ||||| || ||||| ||| || || || Sbjct 81204 TCAGCAGAGGTTGATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTTTGTCAGACTA 81263 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||||||||| || ||||| || ||||| || ||||| || |||| Sbjct 81264 CAACATCCAAAAAGAATCAACCCTTCACCTTGTACTCAGGCTGAGAGGAGGTA 81316 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || |||||||| || || ||||| || |||||| | || || || || || Sbjct 84033 ATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCCTTGAAGTAGAGCCCTCT 84092 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || | || ||| |||||||| | || || || ||| Sbjct 84093 GACTCAATTGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 84152 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || |||||||| ||||| ||| || || || || Sbjct 84153 CAGAGGTTGATCTTTGCCGGTAAACAGTTAGAAGATGGCCGCACTTTGTCAGACTACAAT 84212 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || |||||||| || || || ||||| || |||| Sbjct 84213 ATCCAAAAAGAATCTACCCTTCATCTTGTCCTCAGGCTGAGAGGAGGTA 84261 >seq297 Length=1033366 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || |||||||| || ||| | || |||||||| || Sbjct 233831 ATGCAGATCTTCGTTAAGACTCTTACCGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 233890 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||||| ||||| | || || || ||| Sbjct 233891 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 233950 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || ||||| || ||||| | ||||| | | | || | |||||||| Sbjct 233951 CAGAGGTTGATCTTCGCAGGAAAACAACTAGAAGA-TGGACGTACCCTATCTGATTATAA 234009 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| ||||| ||||| ||||| Sbjct 234010 CATCCAAAAAGAATCCACTCTGCATCTTGTACT 234042 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| || ||||||| || || || || |||| || ||||| || Sbjct 232919 ATGCAGATCTTCGTAAAAACATTGACAGGAAAGACCATAACACTCGAGGTCGAACCATCA 232978 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| |||||||||||| | || || || ||| Sbjct 232979 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCCCCAGATCAG 233038 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | |||| ||||| || || ||| ||||||| | | | ||| || || || || Sbjct 233039 CAGAGGTTAATCTTCGCAGGTAAGCAGCTGGAAGA-TGGACGTACTCTGTCTGACTACAA 233097 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || ||||| ||||| ||||| |||||| Sbjct 233098 CATCCAGAAGGAATCTACTCTCCATCTTGTACTT 233131 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || |||||||| || ||| | || |||||||| || Sbjct 234515 ATGCAGATCTTTGTAAAGACCCTTACCGGCAAAACCATTACCCTGGAAGTTGAACCCTCA 234574 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| ||||| | ||| |||||||| || | || || || ||| Sbjct 234575 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 234634 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || ||||| |||||||| | ||||| | | | || | |||||||| Sbjct 234635 CAGAGGTTGATCTTCGCAGGCAAACAACTAGAAGA-TGGACGTACCCTATCTGATTATAA 234693 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| ||||| ||||| ||||| Sbjct 234694 CATCCAAAAAGAATCCACTCTGCATCTTGTACT 234726 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || |||||||| || ||| | || |||||||| || Sbjct 234059 ATGCAGATCTTCGTTAAGACCCTTACTGGCAAAACAATTACCCTGGAAGTTGAACCCTCA 234118 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| |||||||||||| | || || || ||| Sbjct 234119 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 234178 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| ||||||| | ||| || || || || Sbjct 234179 CAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAAGATGGAAGGACACTGTCTGACTACAAT 234238 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| ||||| ||||| ||||| Sbjct 234239 ATCCAGAAGGAATCCACTCTCCATCTTGTACT 234270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| || |||| || || || || || |||| ||||| || || Sbjct 234287 ATGCAGATCTTCGTAAAAACATTGACTGGAAAGACTATTACACTCGAGGTTGAGCCATCT 234346 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | ||| ||||| ||||| | || || || ||| Sbjct 234347 GATACCATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 234406 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || ||||||||||| | |||||| | || | || || ||| Sbjct 234407 CAGAGGTTAATCTTTGCTGGCAAACAACTAGAAGACGGTCGCACGCTTTCTGACTACAAC 234466 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| ||||| |||||||| Sbjct 234467 ATCCAGAAGGAATCCACTCTCCATCTGGT 234495 >seq2633 Length=69334 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 |||||||| ||| | | | ||||| |||| || || || |||| || ||| | Sbjct 13237 AAGGCAGATTGGGCTCTAGACTGGATCGGCAGCGATACAGCTACTTTCGGTGAAAGGGTC 13178 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 |||| || || || || || ||||| ||||||||||| ||||| || || || || ||| Sbjct 13177 GTCGCATTTGCTGCTGTTGAGGGTATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCTGG 13118 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | |||||||| || || |||||||| |||| || ||||||||| | || || | ||| Sbjct 13117 CTCAAGAAACGAGGTCTTATGCCCGGTTTGACTTTCAGCAACGAGCTTATTTCAAGGGAC 13058 Query 58098 GAGG 58101 |||| Sbjct 13057 GAGG 13054 >seq223 Length=534358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || || ||||| |||| || || || Sbjct 233143 AAGATGCAGATCTTCGTTAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGCCT 233202 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || | || |||||||| ||| | || || || Sbjct 233203 TCAGATACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCTGAT 233262 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || ||||||||||||||| | ||||| Sbjct 233263 CAGCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGA 233300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445653515231280