Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq176 113 6e-20 seq2633 104 3e-17 >seq176 Length=640401 Score = 113 bits (124), Expect = 6e-20 Identities = 142/194 (73%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 62380 GGTTAAC-TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 |||| || ||| ||||| |||||||| | |||| | | |||||| ||| ||||| Sbjct 529662 GGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAA 529721 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | || || ||||| || | ||||||||||||||||||||| ||||||||||| Sbjct 529722 GGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCA 529781 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 | | | |||||| | |||| | || |||||| |||| ||| |||||||| | Sbjct 529782 AGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCC 529841 Query 62559 CAAAGATCCGACGG 62572 || | || ||||| Sbjct 529842 CACATATTGGACGG 529855 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 ||||| | ||| ||||| || | ||| || || ||||||||||| || || || ||||| Sbjct 534019 ATATTCAACTATTTCAGTACACAAATTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATT 534078 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||| ||||||| ||||| || || || || ||||| ||| |||||||| || || Sbjct 534079 TGATTTTCTGTTACAAGCATCTTTGTACAGCATATATGGAACACCTGTTTCAATTTGTGA 534138 Query 63107 TTCTATAATCGCTTTCCA 63124 || || || || |||| Sbjct 534139 ATCGATTATAGCACTCCA 534156 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 ||||| ||| |||||||| || |||| |||||| | || ||||| || || | ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 64068 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 |||||||| ||||| | || || || || || ||||||| | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 64128 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTT 64180 || || ||||| || || ||| | ||| ||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 >seq2633 Length=69334 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 |||| || | ||| |||||||| | ||||| ||||| |||||||| || || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 |||||||||||||||||| ||| ||||| ||||| || || ||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTT 20587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629658106565520