Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq176 105 6e-18 >seq176 Length=640401 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 38392 CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAAC 38451 ||||| | |||||| ||||| | || ||||| | ||||| || |||||| |||| Sbjct 542959 CTAGAAAGTTGAGGTTTAGGAGTAGCTGCATTAAACAGAGTAGGGGAAGCATGTGTGAAA 543018 Query 38452 CATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATA 38511 |||||||||||| ||||||| ||||| || || ||| |||||| | || |||||| Sbjct 543019 TATTTTTCCGACAGTAAATTATACGTTTCAATAACGGAATCAATATCATCTCCATGAATA 543078 Query 38512 CCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | ||| || ||||||| |||||| || || | ||| Sbjct 543079 CCAACAGAAACTCTCATTAACATATGCTGGGGACGTTC 543116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/179 (73%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | |||| |||| |||||||| || |||||| | || |||| | | || | Sbjct 528376 CCAGTTTCCAGGCGTAGAAATGCATTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGT 528435 Query 36917 --ATATT--GTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCT 36972 ||||| || |||| ||||| |||| |||||||| ||||| || |||||||||| Sbjct 528436 GAATATTAAGTGATTG--TGACT--GATCGATAAACGCTCCTCTATCAGCTGCCATTTTC 528491 Query 36973 AAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 || || |||||||||||| ||||| || || ||||| ||| |||||||| ||| || Sbjct 528492 AATATCGTTTTTTGAGATATTTCCCAGACAGTCTTATAAATTGATTTTATATCATCAGG 528550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468406151950960