Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq176 111 2e-19 seq2633 93.3 6e-14 >seq176 Length=640401 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 65172 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 65231 || ||| ||| || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529662 GGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAA 529721 Query 65232 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 65291 ||||| | || || ||||| || | ||||||||||||||||||||| ||||||||||| Sbjct 529722 GGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCA 529781 Query 65292 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 65351 | | | |||||| | |||| | || |||||| |||| |||| |||||||| | Sbjct 529782 AGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCC 529841 Query 65352 CAAAGATCCGACGG 65365 || | || ||||| Sbjct 529842 CACATATTGGACGG 529855 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 ||||| ||| ||||||||||| |||| |||||| || || ||||| || || | ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||||||| ||||| | || || || || || ||||||| | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 66973 || || ||||| || || ||| | ||| |||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 >seq2633 Length=69334 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 |||| || | ||| |||||||| | ||||| ||||| |||||||| || || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 |||||||||||||||||| || || || ||||| || || | |||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTTT 20588 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 ||||||||||| | || |||||||| ||||| | || || || || ||||||||| Sbjct 18499 TATGTATCAATAAGTAGCGAGTACATTTCGGAATGGACATTCTCCATAGCTATTTGAAAT 18558 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || |||||||| || || || |||| ||| || ||| || || | |||| | | ||| Sbjct 18559 CCATAGAAACACCTCGCTTCCGTAACCTGAACCTCTTGACTGAACCTTTCTACAAGGTTT 18618 Query 36548 TCATTCACTATTCCGTC 36564 ||||| || ||||| || Sbjct 18619 TCATTAACGATTCCATC 18635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658006125965560