Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1037 104 2e-17 seq297 95.1 1e-14 >seq1037 Length=250510 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| || ||||||||||| || || || || | ||||| | |||| Sbjct 81518 TGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTCTAACTGT 81459 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| |||||| | |||||||| ||||| || ||||| || || ||| || Sbjct 81458 TTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTA 81399 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | | ||| | |||||| || |||| ||| | |||||||||||| Sbjct 81398 GCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTC 81339 Query 139742 AACGTTTTTACGAATATTTGCATAGCT 139768 | ||||| || || ||||||||| || Sbjct 81338 AGTGTTTTAACAAAGATTTGCATACCT 81312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| |||||||| ||||| || || | || | |||||| | || Sbjct 84464 GTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTG 84405 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||||| |||||| | |||||||| ||||| || ||||| || || ||| || Sbjct 84404 TTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTT 84345 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | |||||| | | || || |||| ||| | ||||||||||| Sbjct 84344 AGCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGT 84285 Query 139741 CAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || || ||||||||| || Sbjct 84284 CAGAGTTTTAACAAAGATTTGCATACCT 84257 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| || ||||||||||| || || || |||| ||||| | |||| Sbjct 84007 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTGT 83948 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | |||| | |||||||| ||||| || ||||| || || ||| || Sbjct 83947 TTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTA 83888 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | | || || |||| ||| | ||||| || || Sbjct 83887 GCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAGTA 83828 Query 139742 AACGTTTTTACGAATATTTGCATAGCT 139768 | ||||||||||| ||||||||| || Sbjct 83827 AGGGTTTTTACGAAGATTTGCATACCT 83801 >seq297 Length=1033366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | |||||||| ||||||||||| || || Sbjct 233373 CCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 233314 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| || ||||| || ||| |||| | | |||||||| || || Sbjct 233313 AGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGA 233254 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | || || | ||||| ||| Sbjct 233253 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACC 233194 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| || | || || || || || ||||| Sbjct 233193 TCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| || ||||| |||||| |||| | | |||||||| || || || |||||||| Sbjct 234442 GTCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTT 234383 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||| | | ||| | || || | ||||| ||||| | || | Sbjct 234382 GTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAAT 234323 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || ||||| ||||||||||| || |||||| Sbjct 234322 AGTCTTTCCAGTCAATGTTTTTACGAAGATCTGCATA 234286 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | || | || ||||| || || ||||| || || | ||||| Sbjct 232905 CGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCA 232846 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || || || ||| |||||| | |||||||| || || || ||||| ||| Sbjct 232845 TCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTG 232786 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | ||| | ||||| | |||||| ||||||| || | Sbjct 232785 TCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATG 232726 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || | ||||||||||| || |||||| Sbjct 232725 GTCTTGCCTGTGAGGGTTTTTACGAAGATCTGCATA 232690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || |||||||| ||||||||||| | || | || | ||||| || ||||| || Sbjct 234027 GTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCA-TCTTCTAGTTGTTTTCC 233969 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||||| | |||||||| ||||| || ||||||||||| |||||| || Sbjct 233968 TGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCTT 233909 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||| | ||| || || || | ||| | || |||||||| | || Sbjct 233908 GACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAGT 233849 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 233848 CTTAACGAAGATCTGCATA 233830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||| || || || ||||| || || || || | || | ||||| ||||| ||||| Sbjct 233115 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGCTGCTTACC 233057 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| | | |||||||| || || |||||||| ||||| |||||| ||| Sbjct 233056 TGCGAAGATTAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGGATTTTAGCTTT 232997 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | || || | || || ||||| | || | ||||| || ||||| || Sbjct 232996 GACATTTTCAATGGTATCTGATGGTTCGACCTCGAGTGTTATGGTCTTTCCTGTCAATGT 232937 Query 139747 TTTTACGAATATTTGCATA 139765 ||||||||| || |||||| Sbjct 232936 TTTTACGAAGATCTGCATA 232918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495938377992800