Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq176 129 8e-25 seq2633 104 3e-17 >seq176 Length=640401 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || ||| ||| || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529662 GGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATAA 529721 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 ||||| | ||||| ||||| || | |||||||||||||||||| |||||||||||||| Sbjct 529722 GGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCA 529781 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCC 79230 | | | |||||| | |||| | | |||||| |||| |||| |||||||||| Sbjct 529782 AGAAGAAGTGAATTTCTGACACCGAACTTTGAGATTTTGGCTTTCAGAGCTTCCCAATCC 529841 Query 79231 CAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 || | || ||||| ||| |||| | |||||||| ||||| Sbjct 529842 CACATATTGGACGGCTTCACACTCCACATGTCATATTGAAGAAT 529885 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 ||||| ||| |||||||| || |||| |||||| || || ||||| || || ||||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||||||| ||||| | || || || || || ||||||| | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 80852 || || ||||| || || ||| | ||| |||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||||||||| || ||||| |||| | || || || || || |||| Sbjct 528382 TCCAGGCGTAGAAATGCATTGATGTAAGTTTTCCATAATTAGGTTCGGCAATGTGAATAT 528441 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||||| |||||||| || ||||| || || || |||||||| | ||||| | Sbjct 528442 TAAGTGATTGTGACTGATCGATAAACGCTCCTCTATCAGCTGCCATTTTCAATATCGTTT 528501 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 |||| | |||||||| | ||| ||||||| | || ||||| || || Sbjct 528502 TTTGAGATATTTCCCAGACAGTCTTATAAATTGATTTTATATCATCAGG 528550 >seq2633 Length=69334 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 |||| || | ||| |||||||| | ||||| ||||| |||||||| || || ||||| | Sbjct 20478 CTTTCGAAAGATCAACTTCTTCGGCAGTCCAGAATGAAGCCTCTGCTTTCTTGTACATCT 20537 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 |||||||||||||||||| ||| ||||| ||||| || || ||||||| Sbjct 20538 TCCAGATGTCATGATATTCGATAGGGAAGATAACGAACCTCCGTGGATTT 20587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718086907404760