Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2633 100 3e-16 seq9819 87.8 2e-12 >seq2633 Length=69334 Score = 100 bits (110), Expect = 3e-16 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 ||||||||||||||||||| ||| | |||||||| || || | || ||||||||||| | Sbjct 18495 AATGTATGTATCAATAAGT-AGCGAGTACATTTCGGAATGGACATTCTCCATAGCTATTT 18553 Query 14200 GAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTC-CGAGTAAAATCTTTCGG 14256 |||| ||||| || || || ||||||| ||| || || || || | || ||||| Sbjct 18554 GAAATCCATAGAAACACCTCGCTTCCGTAACC--TGAACCTCTTGACT-GAACCTTTCTA 18610 Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 | | ||||||||||| || ||||| ||| || || || || | | | || | Sbjct 18611 CAAGGTTTTCATTAACGATTCCATCCGAAGCAGCGAAGAAAGCGAGAACATGAGAGATGA 18670 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAA 14367 ||| |||||||| || || || | |||||| | ||||||||| ||| Sbjct 18671 AGTGACGCTCTTCAGATTTCAGCTTCTCCCAATCAGCCAAATCCTTAAAAA 18721 >seq9819 Length=195331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 131658 AGATCCAAAAAAGATGCATAATGGAACAATAGAATACACAAGTATAGATATGCATAACGG 131717 |||||| ||||| |||||||| ||| || |||| ||||| | ||||| ||||| || Sbjct 71888 AGATCCTAAAAAAGCACATAATGGTACATTAAAATATACAAGCAGAGATAACCATAAAGG 71829 Query 131718 TGTATCCCCGTCTAGGCGAGGAGATTTAGAAATTTTAGGATATTGTATAATAAAATGGTT 131777 ||| || || ||||||||||||||||| |||| ||| ||| ||| | |||| Sbjct 71828 TGTTGAA---TCAAGAAGAGGAGATTTAGAAATTCTAGGCTATAATATGATAGAGTGGTC 71772 Query 131778 AGGCGGTAAATTGCCATGGGAA-AATGATTTAAAAA 131812 || |||| || |||||| || | | || |||||| Sbjct 71771 TGGTGGTATTTTACCATGGCAACATTTATGTAAAAA 71736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479606514880600