Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2633 113 4e-20 seq9819 93.3 4e-14 >seq2633 Length=69334 Score = 113 bits (124), Expect = 4e-20 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 ||||||||||||||||||| ||| | |||||||| || || | || || |||||||| | Sbjct 18495 AATGTATGTATCAATAAGT-AGCGAGTACATTTCGGAATGGACATTCTCCATAGCTATTT 18553 Query 13988 GAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC-CGAGTAAAATCTTTCTG 14044 |||| ||||| ||||| || ||||| | ||| || ||||| || | || |||||| Sbjct 18554 GAAATCCATAGAAACACCTCGCTTCCGTAACC--TGAACCTCTTGACT-GAACCTTTCTA 18610 Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 | | |||||||||||| || ||||| ||| || || || || | | | || | Sbjct 18611 CAAGGTTTTCATTAACGATTCCATCCGAAGCAGCGAAGAAAGCGAGAACATGAGAGATGA 18670 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14155 ||| |||||||| || || || | |||||| || ||||||||| ||| Sbjct 18671 AGTGACGCTCTTCAGATTTCAGCTTCTCCCAATCAGCCAAATCCTTAAAAA 18721 >seq9819 Length=195331 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 131362 ACGAGATCCCAAAAAGATGCATAATGGAACAATAGAGTACACAAGTATAGATATGCATAA 131421 || |||||| ||||| |||||||| ||| || | || ||||| | ||||| ||||| Sbjct 71891 ACCAGATCCTAAAAAAGCACATAATGGTACATTAAAATATACAAGCAGAGATAACCATAA 71832 Query 131422 AGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATG 131481 |||||| | || || |||||||||| |||||| |||| ||| ||| ||| | || Sbjct 71831 AGGTGT---TGAATCAAGAAGAGGAGATTTAGAAATTCTAGGCTATAATATGATAGAGTG 71775 Query 131482 GTTAGGTGGTAAATTGCCATGGGAAGA-TGATTTAAAAA 131519 || ||||||| || |||||| || | | || |||||| Sbjct 71774 GTCTGGTGGTATTTTACCATGGCAACATTTATGTAAAAA 71736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478467603368760