Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq176 107 3e-18 >seq176 Length=640401 Score = 107 bits (118), Expect = 3e-18 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 71133 AGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 71192 ||| ||| ||| || || |||||||| | |||| | | |||||| ||| ||||| Sbjct 529661 AGGTTTACATACCTGGAACTCTCCAGAGAGAACTCGTCTTGAGTAAATGTTAGAAGTATA 529720 Query 71193 CGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 ||||| | ||| || ||||| || | ||||||||||||||||||||| ||||||||||| Sbjct 529721 AGGTTCAAATGATTCGTTATTGCCGAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGC 529780 Query 71253 CACCAATAGACTATTTCTAAGACC---ATGTGATCGGATTTTATCTTTTAGAGATTCCCA 71309 | | || |||||| | ||| | ||| |||||| |||| |||| |||||| Sbjct 529781 AAGAAGAAGTGAATTTCTGACACCGAACTTTGA---GATTTTGGCTTTCAGAGCTTCCCA 529837 Query 71310 ATTCCA 71315 || ||| Sbjct 529838 ATCCCA 529843 Score = 102 bits (112), Expect = 1e-16 Identities = 137/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 |||||||| | ||||| ||||| || || || ||||||| ||||||| ||| ||||| Sbjct 542986 GCATTAAACAGAGTAGGGGAAGCATGTGTGAAATATTTTTCCGACAGTAAATTATACGTT 543045 Query 72484 TCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGC 72543 |||||| | || || ||||| | ||| || || || | || | ||||||||||||| Sbjct 543046 TCAATAACGGAATCAATATCATCTCCATGAATACCAACAGAAACTCTCATTAACATATGC 543105 Query 72544 TGAGGTCTTTCAACGATCTT--GTTATTTATT-TTCAACAAGTAGGATTTTTCCAAAGT- 72599 || || | |||||| | || | || ||| |||||||||| ||| |||| | ||| Sbjct 543106 TGGGGACGTTCAACCACTTTACCTCTTTGATTCCTCAACAAGTATGATCTTTCAAGAGTC 543165 Query 72600 TTTAAAA 72606 | ||||| Sbjct 543166 TGTAAAA 543172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 |||| |||||| | |||| ||| | || ||| || |||| |||| |||||||| Sbjct 528345 TTTCTTACGTACAAAGTAAATGGTTAACTT---ACC-AGTTTCCAGGCGTAGAAATGCAT 528400 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 || ||||| ||| |||| ||||| ||||||||||| | || || ||||| Sbjct 528401 TGATGTAAGTTTTCCATAATTAGGTTCGGCAATGTGAATATTAAGTGATTGTGACTGATC 528460 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 ||| || ||||| || || || |||||||| | ||||| ||||| | |||||||| | Sbjct 528461 GATAAACGCTCCTCTATCAGCTGCCATTTTCAATATCGTTTTTTGAGATATTTCCCAGAC 528520 Query 71007 AGTTTTATAAACTCGCTTAATATCTTCTGG 71036 ||| ||||||| | || ||||| || || Sbjct 528521 AGTCTTATAAATTGATTTTATATCATCAGG 528550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 ||||| ||| |||||||| || |||| |||||| || || ||||| || || | ||| Sbjct 546261 CTAAAAGATTTCTTTGTTTCTTTATGTAAATTTGAAACAGCGATTCTTGCAGCCAAAATA 546320 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 |||||||| ||||| | || || || || || |||| || | ||| | || ||| Sbjct 546321 GCATAATCGGGATGGTTAGTTGTCATTGTAGCAGCGGTTTCGGCAGTTAGATTATCTAAT 546380 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 72935 || || ||||| || || ||| | ||| |||||||||||| | ||| || Sbjct 546381 TCAACAGTTGTCACACCTGGATACAAACCTGAGATAACCTTCATTGTTATGTT 546433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670969242386840