Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1037 107 2e-18 seq297 102 8e-17 >seq1037 Length=250510 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| |||||||| ||||| |||||||| || || || | ||||| Sbjct 81525 AACAAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCTGACAAGGTACGACCATCTTC 81466 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||||| ||| |||||| | |||||||| ||||| || ||||| || || Sbjct 81465 TAACTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTG 81406 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | | ||| | ||| |||||||||| || | ||||| Sbjct 81405 GATCTTAGCCTTAACATTTTCAATAGAGTCAGAGGGCTCTACTTCAAGGGTGATGGTCTT 81346 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||||||| |||||| || || ||||||||| || Sbjct 81345 GCCGGTCAGTGTTTTAACAAAGATTTGCATACCT 81312 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| |||||||||||||| |||||||| || | || | |||||| | |||| Sbjct 84463 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGT 84404 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| |||||| | |||||||| ||||| || ||||| || || || || Sbjct 84403 TTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTA 84344 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | ||||||||||| || | |||||||||||| Sbjct 84343 GCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTC 84284 Query 143162 AATGTTTTTACGAATATTTGCATAGCT 143188 | ||||| || || ||||||||| || Sbjct 84283 AGAGTTTTAACAAAGATTTGCATACCT 84257 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| |||||||||||||| || ||||| || || |||| |||||| | ||| Sbjct 80857 ATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGGCCGTCTTCTAATTG 80798 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| || ||| |||||| | ||||||||| ||||| || ||||| || || || || Sbjct 80797 TTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTT 80738 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 |||| | || | | || | ||| |||||||||| || | |||||||| || Sbjct 80737 AGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACTTCAAGGGTGATAGTCTTGCCAGT 80678 Query 143161 CAATGTTTTTACGAATATTTGCATAGCT 143188 | ||||| || || ||||||||| || Sbjct 80677 AAGGGTTTTCACAAAGATTTGCATACCT 80650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||||||||| |||||||| || || |||| ||||| | |||| Sbjct 81290 TGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGACAAAGTGCGGCCATCTTCTAATTGT 81231 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| |||||| | |||||||| ||||| || ||||| || || || || Sbjct 81230 TTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTG 81171 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 |||| | ||| | ||||| | ||| ||||| || | || | |||||||| || Sbjct 81170 GCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACCTCTAAGGTAATAGTCTTGCCCGTA 81111 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 81110 AGGGTTTTCACGAAGATCTGCAT 81088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| |||||||| ||||| |||||||| || || |||| ||||| | || Sbjct 84008 ATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGACAAGGTGCGACCATCTTCTAACTG 83949 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | |||| | |||||||| ||||| || ||||| || || || || Sbjct 83948 TTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTT 83889 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||||| | | ||||||||||| || | ||||| || || Sbjct 83888 AGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTACCAGT 83829 Query 143161 CAATGTTTTTACGAATATTTGCATAGCT 143188 | ||||||||||| ||||||||| || Sbjct 83828 AAGGGTTTTTACGAAGATTTGCATACCT 83801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| |||||||||||||| || ||||| || || |||| ||||| | || Sbjct 84236 ATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGACAAAGTGCGGCCATCTTCTAACTG 84177 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||| ||| |||||| | |||||||| || || || ||||| || || || || Sbjct 84176 TTTACCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTT 84117 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 |||| | || | | ||| | ||| |||||||||| || | |||||||| || Sbjct 84116 AGCCTTTACATTCTCAATTGAGTCAGAGGGCTCTACTTCAAGGGTGATAGTCTTGCCAGT 84057 Query 143161 CAATGTTTTTACGAATATTTGCATAGCT 143188 | || ||||| || ||||||||| || Sbjct 84056 AAGGGTCTTTACAAAGATTTGCATACCT 84029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | || | ||||| |||||||| ||||| |||||||| || | Sbjct 80652 CCTCCTCTTAGCCTGAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 80593 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||||| || ||| |||| | | |||||||| ||||| Sbjct 80592 AAGGTGCGACCATCTTCTAACTGTTTGCCGGCAAAGATTAACCTCTGCTGATCTGGAGGG 80533 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | ||||| | | ||| ||| Sbjct 80532 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCAACT 80473 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | ||||| || || | ||||||||||| ||||||||| || Sbjct 80472 TCAAGGGTGATAGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCATACCT 80422 >seq297 Length=1033366 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | ||| | || ||||| || || |||||||| || | |||| | Sbjct 234501 CGCAAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCG 234442 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| |||||||| |||||| |||| | | |||||||| || || || ||||||||| Sbjct 234441 TCTTCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTG 234382 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| ||| | | ||| | || || | || || || || | || | Sbjct 234381 TCTTGGATTTTAGCTTTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATA 234322 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || ||||||||||||||||| || |||||| Sbjct 234321 GTCTTTCCAGTCAATGTTTTTACGAAGATCTGCATA 234286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || | ||| | |||||||| || || |||||||| || | Sbjct 233145 CCACCACGTAGACGAAGTACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 233086 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || || ||||| || |||| | | |||||||| || || Sbjct 233085 AGAGTACGTCCA-TCTTCCAGCTGCTTACCTGCGAAGATTAACCTCTGCTGATCTGGGGG 233027 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||||| ||| | | ||| | || || | ||||| || Sbjct 233026 AATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCGAC 232967 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||||||||||||||| || |||||| Sbjct 232966 CTCGAGTGTTATGGTCTTTCCTGTCAATGTTTTTACGAAGATCTGCATA 232918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || ||||||||||| ||||| ||||| | || | || | ||||| |||||||| || Sbjct 234027 GTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCA-TCTTCTAGTTGTTTTCC 233969 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||||| | |||||||| ||||| || ||||||||||| ||||| || Sbjct 233968 TGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCCTT 233909 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | ||||| | |||||| ||||| | || | || |||||||| | || Sbjct 233908 GACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGTAAGAGT 233849 Query 143167 TTTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 233848 CTTAACGAAGATCTGCATA 233830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | ||| | || || || || || |||||||| || | ||||| Sbjct 232905 CGCAAGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGACCA 232846 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || ||| |||||| | |||||||| || || || ||||| ||| Sbjct 232845 TCTTCCAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTG 232786 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| | | ||| | ||||| | ||| || || |||| ||| | Sbjct 232785 TCTTGGATCTTGGCTTTCACATTTTCAATGGTGTCTGAGGGCTCGACCTCAAGAGTGATG 232726 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| || | ||||||||||| || |||||| Sbjct 232725 GTCTTGCCTGTGAGGGTTTTTACGAAGATCTGCATA 232690 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | ||| | ||||| || ||||| |||||||| || Sbjct 233373 CCACCACGGAGACGCAAGACCAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 233314 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| |||||||| || ||| |||| | | |||||||| || || Sbjct 233313 AGTGTGCGACCATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGA 233254 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | ||| | || || | || || || Sbjct 233253 ATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATGGTATCTGATGGCTCAACC 233194 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||||| || | || || || || || ||||| Sbjct 233193 TCAAGAGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 233147 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||| | || ||||||||||| ||||| ||||| Sbjct 234742 GCCTCCACGAAGACGGAGTACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGA 234683 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || | || | ||||| |||||||| || || |||||| | |||||||| || | Sbjct 234682 TAGGGTACGTCCA-TCTTCTAGTTGTTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGG 234624 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || || ||||| ||||| || | | ||| | || || | |||||| | Sbjct 234623 GAATACCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAA 234564 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || |||||||| | || ||||| || || ||||| Sbjct 234563 CTTCCAGGGTAATGGTTTTGCCGGTAAGGGTCTTTACAAAGATCTGCAT 234515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506886004940880