Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq652 161 1e-34 seq2633 93.3 6e-14 >seq652 Length=419067 Score = 161 bits (178), Expect = 1e-34 Identities = 308/451 (68%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 70056 ACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCA 70115 |||| |||| |||||| |||| || |||||||| ||||| ||||| || | ||| || Sbjct 407459 ACAGGGAAGAAGGCGATTTGGGACCTGTGTACGGTTTCCAATGGAGACATTTCGGCGCCG 407400 Query 70116 AGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATC 70174 | || ||||| || || || || ||| ||||||| || || ||| | | Sbjct 407399 AATACGTAGATATGAACTAC-GATTACAGAGGTAAGGGTGTCGACCAGTTGACCAATTTG 407341 Query 70175 ATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCT 70234 || || | |||| ||||| || | || || || | |||||||| | ||||| || Sbjct 407340 ATCGAATCCATCAAAACCAAACCGAACGACAGAAGATTGATAATGTGCGCTTGGAACCCG 407281 Query 70235 GCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTAC 70294 |||| ||| ||||||| ||||| || || |||||| ||| |||||||| | | Sbjct 407280 TTAGATCTGCCTAAAATGGCTCTACCTCCCTGCCACTGTCTGGTCCAGTTTTATGTGGCC 407221 Query 70295 GATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 || || ||| | ||| | | | || ||||| ||||||||||| | || ||||| Sbjct 407220 GACGGTAAACTTTCAAGTCAACTTTACCAGAGATCGGCCGACATGGGTTTAGGCGTACCG 407161 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 |||||||| || || | | | || ||||||| |||||| |||||||| ||||| Sbjct 407160 TTTAACATAGCTTCGTACGCCTTACTCACCTACATGATCGCTCACGTTACCGGCTTGAAA 407101 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 | || || |||||||| | || ||||||||||| || || || ||| | || | Sbjct 407100 CCCGGTGAATTTGTACACACTTTGGGAGACGCTCACGTCTACTTGAACCACGTTAAGGCC 407041 Query 70475 TTAAAGGTGCAACTCGAACGGGAGCCGAGAC 70505 ||| | ||| |||| |||| ||||||| Sbjct 407040 TTACAACAACAAGTCGAGAGGGATCCGAGAC 407010 >seq2633 Length=69334 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || ||||| || || || ||||| || ||||||||||| || || || || || || ||| Sbjct 13177 GTCGCATTTGCTGCTGTTGAGGGTATTTTCTTTTCGGGAAGCTTCGCCGCTATTTTCTGG 13118 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| || || || |||||||| |||| ||| |||||| |||| || | ||| Sbjct 13117 CTCAAGAAACGAGGTCTTATGCCCGGTTTGACTTTCAGCAACGAGCTTATTTCAAGGGAC 13058 Query 125550 GAGG 125553 |||| Sbjct 13057 GAGG 13054 Score = 86.0 bits (94), Expect = 9e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 |||| ||||| |||| |||||| ||||| |||||| || ||| || ||||| ||||||| Sbjct 82 AGATCTACAATGCCACGAATCCATTTGACTTCATGGACAACATCTCTCTAGAAGGTAAGA 23 Query 125839 CCAACTTTTTCGAGAAGAAGGT 125860 | ||||| ||||||||||| || Sbjct 22 CGAACTTCTTCGAGAAGAAAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740871536020840