Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq297 105 5e-18 seq1037 96.9 3e-15 >seq297 Length=1033366 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || || || || |||||||| || ||| |||| | ||| Sbjct 233814 AAGACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCT 233755 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| ||||| |||||| | ||||| | || || || ||||| ||||||||||| Sbjct 233754 TCTAGCTGTTTACCAGCGAAGATCAACCTCTGCTGATCAGGGGGAATACCTTCTTTGTCT 233695 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || |||| |||||||| | ||| || || |||||||| ||| Sbjct 233694 TGGATTTTAGCCTTAACGTTTTCAATGGTATCTGAAGGTTCAACTTCCAAGGTAATAGTT 233635 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || || || |||||| Sbjct 233634 TTACCAGTGAGGGTCTTAACGAAGATCTGCATA 233602 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| ||||| ||||| ||| | | | ||||||| ||| Sbjct 234718 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 234659 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| | ||||| | || || || ||||| || || ||||| ||||| Sbjct 234658 TTTGCCTGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTT 234599 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||| |||||||| ||| || || | |||||||||||| || || Sbjct 234598 AGCCTTGACGTTTTCAATGGTATCTGAGGGTTCAACTTCCAGGGTAATGGTTTTGCCGGT 234539 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || ||||| Sbjct 234538 AAGGGTCTTTACAAAGATCTGCAT 234515 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| ||||| ||||| ||| | | | ||||||| ||| Sbjct 234034 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 233975 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | ||||| | || || || ||||| ||||||||||| ||||| Sbjct 233974 TTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTT 233915 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||| ||||| || ||| || || | |||||| ||||| || || Sbjct 233914 AGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGT 233855 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || |||||| Sbjct 233854 AAGAGTCTTAACGAAGATCTGCATA 233830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || ||||| || || || |||||||| || || | | ||||| Sbjct 234498 AAGACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCT 234439 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 |||| |||||||||||| | || || | || || || ||||| ||||||||||| Sbjct 234438 TCTAGTTGTTTGCCAGCAAAGATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTGTCT 234379 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || ||| |||| |||||||| || || || | ||||| || Sbjct 234378 TGGATTTTAGCT-TTGACATTTTCAATGGTATCAGATGGCTCAACCTCGAGTGTAATAGT 234320 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||||| || || |||||| Sbjct 234319 CTTTCCAGTCAATGTTTTTACGAAGATCTGCATA 234286 >seq1037 Length=250510 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || | |||||||| || |||||||| |||||||| || Sbjct 81314 CCTCCTCTCAGCCTGAGTACAAGGTGAAGGGTTGATTCTTTTTGGATGTTGTAGTCTGAC 81255 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | |||||||||||||| || || | ||||| | || || || || Sbjct 81254 AAAGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 81195 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| ||||||| |||| ||||| || ||||| Sbjct 81194 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATGGTGTCTGAGGGCTCTACC 81135 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||||||||| || || || || || ||||| || || || ||||| ||| Sbjct 81134 TCTAAGGTAATAGTCTTGCCCGTAAGGGTTTTCACGAAGATCTGCATCTTT 81084 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || |||||||| |||||||| || || | | ||||||| |||||| Sbjct 84463 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCTGATAAGGTACGGCCGTCTTCCAATTGT 84404 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || || || || || ||||| || || || || Sbjct 84403 TTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGGATACCTTCCTTATCCTGGATCTTA 84344 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || || |||||| || | ||| ||||| || || ||| Sbjct 84343 GCCTTAACATTCTCGATTGTGTCTGATGCTTCTACTTCAAGGGTGATGGTCTTGCCGGTC 84284 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| ||||||||| Sbjct 84283 AGAGTTTTAACAAAGATTTGCATA 84260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || | || | ||||||||| || |||||||| || ||||| || Sbjct 80880 CCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAC 80821 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||||||||||||||| || | ||||| | ||| || || || Sbjct 80820 AAAGTGCGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAGGG 80761 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||||||| | || || | ||| ||||| Sbjct 80760 ATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTACT 80701 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || || || || || || ||||| ||||| ||||||||| Sbjct 80700 TCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATA 80653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || || | ||| | || | |||||| || || || ||||| |||||||| || Sbjct 84031 CCTCCCCTAAGTCTAAGTACAAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 83972 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||||||| ||||||||||| | ||||| | || || || ||| Sbjct 83971 AAGGTGCGACCATCTTCTAACTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGAGGA 83912 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||| ||| | || ||||| || |||||| Sbjct 83911 ATACCTTCCTTATCCTGGATCTTAGCCTTAACATTCTCAATGGTGTCTGATGCTTCTACT 83852 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| ||||| || || |||||||| || ||||||||| Sbjct 83851 TCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACGAAGATTTGCATA 83804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362089775578719