Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq297 107 1e-18 seq1037 82.4 5e-11 >seq297 Length=1033366 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| |||||||| || |||||||| || ||| |||| || | ||| Sbjct 234034 ATGCAGAGTGGATTCTTTTTGGATGTTATAATCAGATAGGGTACGTCCATCTTCTAGTTG 233975 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||||||||| || ||||||| ||||| || |||| | ||||||||| ||| ||||| Sbjct 233974 TTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTT 233915 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| | ||| || |||| || || || || | ||||||||||| ||||| Sbjct 233914 AGCCTTGACGTTTTCAATGGTGTCTGAGGGTTCAACTTCCAGGGTAATTGTTTTGCCGGT 233855 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 | |||||| || || || ||||| Sbjct 233854 AAGAGTCTTAACGAAGATCTGCAT 233831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||| ||||| || || | ||||| || | || | |||||||| Sbjct 233531 CATCTTCTAGTTGTTTTCCGGCAAAGATTAATCTCTGCTGATCTGGGGGAATACCTTCTT 233472 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||||| |||||| | ||| |||||||| || || || || | |||| Sbjct 233471 TGTCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCCAGGGTAA 233412 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || || | |||||| || || || ||||| Sbjct 233411 TTGTTTTGCCAGTAAGAGTCTTAACGAAGATCTGCAT 233375 >seq1037 Length=250510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 ||||||||||| || | || | ||| || || |||||||| ||||| || || | Sbjct 80881 ACCTCCTCTCAGCCTGAGGACAAGATGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGA 80822 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || | || || |||||||| || ||||| ||||||| |||||| || ||| Sbjct 80821 CAAAGTG-CGGCCGTCTTCTAATTGTTTGCCGGCAAAGATCAACCTTTGCTGATCTGGAG 80763 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| ||||| || || || || | ||| | ||| | ||||| | Sbjct 80762 GGATACCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCAATTGAATCAGAGGGCTCTA 80703 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || | || |||||||| |||||||| Sbjct 80702 CTTCAAGGGTGATAGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354690003082332